KEGG   Panicum virgatum (switchgrass): 120652582
Entry
120652582         CDS       T07260                                 
Name
(RefSeq) nuclear poly(A) polymerase 3-like
  KO
K14376  poly(A) polymerase [EC:2.7.7.19]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    120652582
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120652582
Enzymes [BR:pvir01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     120652582
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Poly(A) addition factors
     120652582
SSDB
Motif
Pfam: PAP_NTPase PAP_central NTP_transf_2 MTPAP-like_central PAP_RNA-bind Polbeta
Other DBs
NCBI-GeneID: 120652582
NCBI-ProteinID: XP_039786382
Position
9K:56824998..56831122
AA seq 535 aa
MALDLAVAGSAARKPEVQTLAPVLLLGPPPPPPIPPTPGMYLPGPPPPGVLLPRPIPAPL
TREVIAHMDECRSRSLLKFISDVGAVPSLEDEQRRDRVVRELGKIVMDWAKRVAYEQGKQ
HWITSAAVLTFGSYALGAYGPESDIDVLCVGPYITSLQHHFFVVLRHMLEGRPEVSELHS
IEGAKVPLMRFKFNGILVDFPYVQLPVINAAEAIRAFDPRVLENVDGASWKCLSGVRVNR
QIIQLVPNMKKFQYLLRCLKLWARKRGLHCHLLGFFAGIHLAILAAYVCRRHPNASINTL
LSLFFDIFVHWPWPLPVSLLDPPALCRGPDGCSHMPIMLPCIPPEFCSSSMTESTFSKIK
EELQRGYALTKDTRTTDFDWSWLFAPFPYGARYKCFLRIFLSAPMAEELLDWVGWVKSRF
RNLILKLESLGVYCDPDPSEQVDHTSNEPNAVFFWGLMYRRNIQICTSSLKEDFMRSVLN
NIYGKKKCAHSDITMSIVGSPQLPKSVFDHSVYSEKLPPHMMGHQLMKQSYNAVS
NT seq 1608 nt   +upstreamnt  +downstreamnt
atggcgctcgacctcgctgtcgcgggctcggcggcccgcaagccggaggtccaaacccta
gcgcccgtgctgctcctgggtccgccacctccgccgcctatcccgccgacgccggggatg
tacctcccaggtcccccgccccccggggttctcctgccgcgcccgatccccgccccgctc
actcgcgaggtcatcgcgcacatggacgagtgccgcagccgctccctcctcaagttcatt
tccgatgtgggggctgtgccttcgctagaggacgagcagaggagggatcgggtggtacgc
gaactgggcaagatagtgatggattgggcaaagagggtggcgtacgagcaggggaaacaa
cattggatcacatcagctgcggtgttgaccttcggctcctatgccttgggggcatacgga
cctgaatccgatattgatgttctctgtgtcggtccctatattacatcattgcaacatcat
ttttttgttgttctgcgacacatgcttgaagggaggccagaagtatcagaattgcattca
attgaaggagctaaggttccattgatgcgttttaaattcaacggaattttagttgacttt
ccttatgtccaactcccagtgatcaatgctgcagaggctatacgtgcatttgatccccgc
gtgctagagaatgttgatggggcaagctggaaatgtctatctggagttcgtgttaataga
cagatcattcaattggttcctaatatgaagaagtttcaatatctgttgcggtgtcttaaa
ctatgggcaagaaaaagaggacttcattgccatctacttggcttctttgctgggattcat
ttggcgattcttgctgcatatgtttgtcgcagacatccaaatgctagtataaatactttg
ttatctctgttcttcgatatttttgttcattggccttggcctctcccagtgagtttgctt
gatccaccagctctttgtcggggtcctgatgggtgctctcacatgcccataatgttgccc
tgtattccaccagaattttgctcttctagtatgacagaaagtactttcagcaaaatcaaa
gaagaacttcagcgaggttatgctttgaccaaggataccaggactactgattttgactgg
agttggctctttgcaccttttccatacggtgcaagatacaaatgctttctccgtatattt
ctctctgctccgatggctgaagaattacttgactgggttggatgggtgaaatcacgtttc
cgcaaccttattctcaagctcgagagtcttggtgtttactgtgacccagatccatcggag
caagttgatcataccagtaatgagccgaatgctgtattcttctggggtctcatgtacaga
aggaatattcaaatatgtacaagttctctcaaagaagacttcatgagaagtgtcctgaat
aacatctatggaaagaaaaagtgtgcccattcggatatcacaatgtccattgttgggtct
ccccagctgcccaaaagtgtttttgatcactcagtttactcagagaagctgccaccacat
atgatggggcaccaactaatgaagcagagctacaatgcagttagttag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (10)   

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