KEGG   Panicum virgatum (switchgrass): 120663867
Entry
120663867         CDS       T07260                                 
Name
(RefSeq) pre-mRNA-splicing factor CWC22 homolog
  KO
K13100  pre-mRNA-splicing factor CWC22
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvir03041]
    120663867
Spliceosome [BR:pvir03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    120663867
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    120663867
SSDB
Motif
Pfam: MA3 HEAT_5MP1_2
Other DBs
NCBI-GeneID: 120663867
NCBI-ProteinID: XP_039798743
Position
3N:5344678..5350415
AA seq 802 aa
MAASASPAASPPRRRHSHRDDDSPRRRKRRASPSPPRSPSPGADVDRRRRSRASPPGPDR
RGGGGGDAKPSEEKENGHAKPGRDEESDDRPPQRARVSDGEEDGDHRRRRARVSDDEKED
GRRRRRARDSDEERDDRRGKRDRERDSRRHRRRSPSTESGSSPDERRRRRHRRDEGSRRR
DDRRRRDDDRGERRRSPEKRERRSPEKREPTPPLPPPPPLLPEMIPGRTGGIYIPPFRMA
QMLREVEDKSSPEYQRLTWDALKKSINGLVNKVNATNIKNIVPELFAENLVRGRGLFCQS
CIKSQMASPGFTDVFAALVAVVNTKFPEIGRLLLVRVVLQLKRAYKRNDKPQLLAATKFI
AHLVNQVVAHELVALELLTVLLENPTDDSVEVAVGFVKECGAMLQDLSPQGLHAIFERFR
GILHEGEIDKRVQFLIEGLFAIRKAKFQGFPAIRPELDLVEQEDQFTHEISLEDDLDPET
NLNVFRANPNFVEDEKAYENLKRSILGAESSEDEEGSDAASDDEEEEESDEEEDEEQMEI
RDRTETNLVNLRRTIYLTIMSSVDFEEAGHKLMKIKLEPGQEMELCIMLLECCSQERTYL
RYYGLLGQRFCMINKVYQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTDALPWHV
LAYIRLTEEDTTSSSRIFIKILFQELSDHLGIRLLNERLNDPNMQGSFESIFPKDHPKNT
RFSINFFTSIGLGGITESLREYLKNMPRLIMQQQKPESSESESIGSESGSESSSSGSSSE
SESEPSSDEGDRRRSKKRRKKT
NT seq 2409 nt   +upstreamnt  +downstreamnt
atggccgcctccgcctctcctgccgcatccccgccccgccgccgccacagccaccgcgac
gacgactccccgcgccgccgcaagcgccgcgcgtccccatccccgccccgctcgccatcc
ccaggcgccgacgtggatcgccgccgcagatctagagcttcaccgcccggtcccgaccgc
cgcggcggcggcggcggcgacgccaagccctccgaggagaaggagaacggccacgccaag
cccggaagggatgaggagagcgacgaccgccctccccagcgtgctagggtttcggatggg
gaagaggatggcgaccaccggaggcggcgcgctagggtttccgacgacgagaaggaggat
ggccggcggcggaggcgggctagggattcggatgaggagagggacgaccgccgcggcaag
cgcgaccgggagagggacagccggcgccaccgccgccggagccccagcacggagtcggga
tcctcacccgacgagcgccgccggcgccgccaccgacgagatgagggctctaggcggcgg
gatgaccgaaggcgccgggatgacgaccgtggcgagcgccggaggagccctgagaagagg
gagcggagaagccctgagaagagggagccgacgccacccctgcccccacctccgccgctg
ctgccggagatgatccctgggcgcacgggagggatctacatcccgccattccgcatggcc
cagatgctgcgggaggtagaggacaagtcgagccctgagtaccagcggctcacatgggat
gctctcaagaagagcataaacgggttggtcaataaggtcaatgctaccaatatcaagaat
atagtgccagagctctttgctgagaaccttgttcgcgggcgggggctcttctgccaatcg
tgcataaagtcacagatggcctcacctgggttcaccgacgtttttgctgcacttgttgcg
gtcgtcaataccaagttccctgagatcggacggttgcttcttgttcgtgttgtgctccag
ctcaagagggcgtataagcgaaatgacaagccccaattgcttgcagcaaccaagtttata
gcacacttggtaaatcaggtggtggcacatgagcttgtggcactggagcttcttacagta
ctccttgaaaatccaactgatgatagtgttgaggtggctgttggtttcgtcaaagagtgt
ggggcaatgctacaggacctatccccacaagggcttcatgctatttttgaaagatttcgg
ggtatacttcacgaaggagaaatagacaagagagtgcaatttttgatcgaaggacttttt
gcaattagaaaggctaaatttcagggattccctgccatccgaccggagttggatcttgtg
gagcaggaggaccagtttacacatgagatatcccttgaagatgacctagaccctgagacc
aatctaaatgttttcagggcaaacccaaattttgttgaagacgagaaggcctatgagaac
ctaaagagaagcatcctgggagcagaatcttctgaagatgaagaaggatcagatgccgct
tctgatgatgaggaagaggaagaatctgatgaagaggaggatgaggaacagatggagata
agggatagaacagagacgaatcttgtgaatcttagaagaacaatatacttgactattatg
tccagtgttgattttgaagaagctggtcacaagcttatgaaaattaaactcgagcctggt
caagagatggagctgtgtattatgcttcttgagtgttgcagtcaagagagaacatacctt
cggtattatgggctgctaggacagcgattttgcatgatcaacaaagtgtaccaagagaac
tttgaaaaatgtttcgtccaacaatattctatgattcatcgccttgaaacaaacaagttg
aggaatgttgccaagttctttgcgcatttgttggggactgatgcactcccttggcatgtt
ttggcttacatccggctgacagaggaagacacaacatcctcttcccgaattttcataaaa
attctattccaggagttatcggaccacctgggcatacgcctactcaatgagagactgaat
gatcctaacatgcaaggttccttcgagtcgatcttccccaaggatcatccaaagaacaca
aggttctccatcaatttcttcacctccattggtcttggcggtatcacagagagcctgagg
gaatacttgaagaacatgccacgcctcataatgcagcagcagaaaccggagtcatctgaa
tcagaatcaatcggatcagaatctggttcagaaagctccagctcagggtccagttctgag
tcagagtcggaaccaagctctgatgagggcgacagaaggcgaagtaagaagagaaggaag
aagacttga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (6)   

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