KEGG   Panicum virgatum (switchgrass): 120707363
Entry
120707363         CDS       T07260                                 
Name
(RefSeq) actin-related protein 3-like
  KO
K18584  actin-related protein 3
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir04144  Endocytosis
pvir04517  IgSF CAM signaling
pvir05100  Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04517 IgSF CAM signaling
    120707363
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    120707363
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05100 Bacterial invasion of epithelial cells
    120707363
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pvir04131]
    120707363
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:pvir04812]
    120707363
   04147 Exosome [BR:pvir04147]
    120707363
Membrane trafficking [BR:pvir04131]
 Others
  Actin-binding proteins
   Arp2/3 complex
    120707363
Cytoskeleton proteins [BR:pvir04812]
 Eukaryotic cytoskeleton proteins
  Actin filaments / Microfilaments
   Actin-binding proteins
    Arp2/3 complex
     120707363
Exosome [BR:pvir04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   120707363
  Exosomal proteins of other body fluids (saliva and urine)
   120707363
  Exosomal proteins of bladder cancer cells
   120707363
SSDB
Motif
Pfam: Actin MreB_Mbl FtsA
Other DBs
NCBI-GeneID: 120707363
NCBI-ProteinID: XP_039848195
Position
1K:39884899..39889188
AA seq 433 aa
MDALSRPAVVIDNGTGYTKMGFAGNVEPCFINPTAVAVNDSFAASAQPAPRGGPAKGNWL
AQHSAGVMADLDFYIGEEALARSRASSTYSLSYPIRNGQVENWDTMERFWQQCIFNYLRC
DPEDHYFLLTESPLTAPETREYTGEIMFETFNVPGLYIAVQPVLALAAGYTTTKCEMTGV
VVDVGDGATHIVPVADGYVIGSSIRSIPLTGKDVTQFVQQLMKERGENIPPEESFDVARR
VKEMYCYTSSDIVKEFNKYDREPSKYIKRWTGIKPKTGAKYTCDIGYERFLGPEIFFNPE
IYNSDFTTPLQVVIDRCIQSSPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDAR
VRASNTRLISGDPKAQPIEVNVVSHPIQRYAVWFGGSVLASTAEFYEACHTKAEYEEYGA
SICRTNPVFKGMY
NT seq 1302 nt   +upstreamnt  +downstreamnt
atggacgccctgtcccgccccgccgtcgtcatcgacaacggcaccgggtacacgaagatg
gggttcgcggggaacgtggagccctgcttcatcaaccccaccgccgtcgccgtcaacgac
tccttcgccgcctccgcgcagccggcgcccaggggcggccccgccaaggggaactggctc
gcgcagcacagcgccggggtcatggccgacctcgacttctacatcggggaggaggcgctg
gcgcggtcccgcgccagcagcacctacagcctcagctaccccatccgtaatggccaggtg
gagaattgggatactatggagaggttctggcaacagtgcatcttcaattacctgcggtgc
gatccggaagaccattactttcttctaaccgagagccctctgactgctcctgagacccgg
gagtacaccggagagatcatgttcgagacgttcaatgtgcctggcctctatattgcagtg
caaccggtccttgcgctcgctgctgggtacactaccaccaagtgtgaaatgacaggtgtt
gtagttgatgtgggtgatggagctacccacattgttcctgttgcggatggttatgtcatt
gggagcagtatcagatctattccgcttacaggcaaggatgttacccagtttgtccagcaa
cttatgaaggaaagaggtgagaatattccaccagaagaatcttttgatgtagcgaggagg
gttaaagaaatgtactgctatacttcttcagacattgtgaaggaattcaataagtatgac
agagagccctcgaagtacattaaacgctggactggcatcaaaccgaaaactggtgcaaaa
tacacatgcgacattggatatgagcgattcttggggcctgagatattcttcaacccagag
atatacaacagtgactttaccactcctttacaagttgttattgacaggtgcatccaatca
tccccaatagacacaagaagggctctatataagaatattgtcttgtctggaggatcgact
atgtttaaggattttcatcggagattacaacgggacctaaaaaagatagtggatgcacgg
gtccgtgcatctaatactcggcttattagtggagatccgaaggcccaacctatagaagtg
aatgtggtcagtcatcctattcaaagatatgcagtatggtttggcggttctgttcttgct
tctaccgcagaattctacgaggcttgccacacaaaagcagaatatgaagagtacggcgca
agcatctgccgaacaaatcctgttttcaaagggatgtattga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (7)   

Download RDF
DBGET integrated database retrieval system