KEGG   Rhodoferax antarcticus: RA876_05875
Entry
RA876_05875       CDS       T04655                                 
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
rac  Rhodoferax antarcticus
Pathway
rac03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rac00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RA876_05875
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rac03019]
    RA876_05875
   03016 Transfer RNA biogenesis [BR:rac03016]
    RA876_05875
Enzymes [BR:rac01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     RA876_05875
Messenger RNA biogenesis [BR:rac03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     RA876_05875
Transfer RNA biogenesis [BR:rac03016]
 Prokaryotic type
  tRNA degradation factors
   RA876_05875
SSDB
Motif
Pfam: RNase_PH RNase_PH_C PNPase S1 KH_1 KH_2 S1_RRP5 OB_RRP5_4th KH_KhpA-B DNA_pol3_a_NI KH-I_KHDC4-BBP
Other DBs
NCBI-ProteinID: APW45979
Position
1205799..1207922
AA seq 707 aa
MTMFKKVSKTFQWGQNTVTMETGEIARQASGAVKLDMDGTVVLATVVARTEGKAGQDFFP
LTVDYLEKAYAAGKIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVHVVVHTL
SLNPEVDADIAAMIAVSAALSISGVPFSGPIGAARVGYINGEYVLNPGQTLRKSSQMELV
VAGTESAVLMVESEADQLSEEIMLGAVVFGHTQGAIAINAIHDLVRDAGKPVWDWKPAAK
DEALIAKIDVLAKDKLVAAYQIRNKQARTQACRATYAEVMAALKAEGVAFDSVAIEGLLF
EIEAKIVRGQILAGEPRIDGRDTRTVRAIEIRNGVLPRTHGSALFTRGETQALVVTTLGT
ERDAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAVLPSK
EDFPYTMRVVSEVTESNGSSSMASVCGGCLSLMDAGVPLKAHVAGIAMGLIKDDNRFAVL
TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMT
EAMAEAKTEVSNFAPRLFTMKINPEKIRDVIGKGGSVIRALTEETGTQINIDEDGTITIA
SSDPAKAEEAKRRIEQITAEVEIGKIYEGPVVKILDFGALINLLPGKDGLLHISQIAHER
VEKVTDYLSEGQIVKVKVMETDEKGRVKLSMKALLERPVQGGNDNRA
NT seq 2124 nt   +upstreamnt  +downstreamnt
atgacaatgttcaaaaaagttagcaaaaccttccaatggggtcaaaacacagtcaccatg
gaaactggcgaaatcgcccgtcaagccagcggcgcagtgaagcttgacatggacggcact
gtggtgttggctaccgtggtggccaggaccgaaggcaaagccggtcaggatttctttcca
ctgaccgttgattaccttgaaaaagcctacgctgcaggcaagattccgggcagcttcttc
aagcgtgaaggccgccccagcgagtttgaaacactcaccagccgcctgattgaccgccca
atacgcccattgtttcccgaaggcttcttcaacgaagtgcatgtggtggtgcacaccctg
tcgctcaaccctgaagtcgacgccgacattgccgccatgattgcggtgagcgcagcgctg
tcgatcagcggcgtgccgttcagcggcccgattggtgctgcccgcgtgggttacatcaac
ggcgaatatgtgcttaacccgggccaaaccctgcgcaaatccagccagatggaattggtg
gtggcaggtaccgaatctgccgtactgatggtcgagtctgaggctgaccagttgtccgaa
gaaatcatgctcggcgcggtggtgtttggccacacccaaggtgcgattgccatcaacgcg
atccacgacctcgtgcgtgatgctggcaagccggtgtgggactggaagcccgctgccaaa
gacgaagcgctgatcgccaagatcgacgtactggccaaggacaaactggtggccgcctac
caaatccgcaataagcaagcccgcacccaagcctgccgcgcgacctacgctgaagtcatg
gccgcactgaaggccgaaggcgtggcgtttgattcggtggctatcgaaggcctgctgttt
gaaattgaagcgaagattgttcgtggccagattctggcgggcgagccgcgtattgacggt
cgtgacacacgcaccgtgcgtgctatcgaaatccgcaacggcgtgctgccgcgcacccac
ggttccgccctgttcacgcggggtgaaacccaggcgctggtggtgaccacgctgggtacc
gagcgtgatgcccagcgcattgacgccttgagcggcgactacgaagaccgcttcatgctg
cactacaacatgcctccctttgccaccggcgaaaccggccgtgtgggcacgcccaagcgc
cgcgaaattggtcacggccgtctggccaagcgcgcgctgattgccgtgttgccgagcaag
gaagacttcccctacaccatgcgtgtggtgtctgaagtgaccgaatccaacggttcgtcg
agcatggcctcggtgtgcggcggctgcctgagtctgatggacgctggcgtgcctttgaag
gcgcatgtggccggcattgccatgggcctgatcaaggacgacaaccgctttgccgtgctg
actgacatcctgggtgatgaagaccacctcggcgacatggacttcaaggtggccggtacc
accaacggcatcaccgcgctgcagatggacatcaagatccagggcatcaccaaggaaatc
atgcaagtcgctttggcacaagccaaagaagcgcgtatgcatatcctgggcaagatgact
gaagccatggcagaggccaagaccgaagtctccaatttcgcgccgcgtctgttcaccatg
aagatcaacccggaaaagatccgcgacgtgatcggcaagggcggctcggtgatccgtgcg
ctgaccgaagaaaccggcacccagatcaatatcgacgaagacggcaccatcaccatcgca
tcaagtgacccggccaaagccgaagaagccaagcgccgcattgagcagatcaccgctgaa
gttgaaatcggcaagatttatgaaggcccggtggtgaagattttggacttcggcgcgctg
atcaacctgctgcccggcaaagatggcctgctgcacatcagccagatcgcccatgaacgc
gtcgagaaggtgactgactatttgtcagaaggccagatcgttaaggtcaaggtcatggaa
accgacgaaaaaggccgtgtcaagctgtcgatgaaagccttgctggagcgcccagtccaa
ggcggcaacgataatcgggcttga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (13)   

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