KEGG T06020: 112164434

Rosa chinensis (China rose): 112164434

Entry

112164434         CDS       T06020

Name

(RefSeq) pre-mRNA-splicing factor CWC22 homolog

K13100

pre-mRNA-splicing factor CWC22

Organism

rcn Rosa chinensis (China rose)

Brite

KEGG Orthology (KO) [BR:rcn00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rcn03041]
    112164434
Spliceosome [BR:rcn03041]
Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    112164434
Complex C
   U4/U6.U5 tri-SnRNP related factors
    112164434

SSDB

Motif

Pfam:

MA3 MIF4G

Other DBs

NCBI-GeneID:

112164434

NCBI-ProteinID:

XP_024156394

Position

5:83165308..83170322

AA seq 880 aa
MARRHSGESSDDDVRGGRDKYRQHRSKSESRSNNHLEQGEIDSSDSDRDNRTKRQGKRDD
EKERERSSERVPSDRHGRWRGDRQDRDRHTSDEDGEVAEKDRDGQERERKNENGNRQRER
DPSDRYGRWRGDRQDRDVQTSDEDGELAEKDRGGQERERKNENGNRQRENGNGDRGRENR
SSEDDERLKRYRHESGHRRREDEDGRRNRDRHSRHYSERRDEREERRTSERKRDSRDDGG
QSRHRNRDDDGEIKNRRNKEVNERREDTERDDRMLENSKPQGRSTLQQGNLNNNVANLGK
SGGVYIPPYKLARMMKEVEDKSSVEYQRLTWDALRKSINGLVNKVNAANIKNIIPEIFAE
NLIRGRGLFCRSCMKSQMASPGFTDIFAGLVAVVNTKFPEVGELLLRRIVLQLKRAFKRN
DKPQLLAAVKFIAHLVNQQVAHEIIALELLTVLLENPTDDSVEVAVGFVTECGSILQDLS
PKGLHGIFERFRGILHEGEIDKRVQFLIEGLFALRKAKFQGHPAVRPELDLVEQEDQLTH
EISLQEEINPEITLDIFKPDPDFIENEKRYEDVKKTILGEDSEEEGSDAASDGEDDDDEE
EDEDDDEEEDEQEMKIRDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEME
LCVMLLECCSQERTYLRYYGLLGQRFCMINRIHQENFEKCFVQQYSMIHRLETNKLRNVA
KFFAHLLGTDALPWHCLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPAM
QDSYESIFPRDNPKNTRFAINFFTSIGLGGITENLREYLKHMPRLIMQQQKAASDEESDS
SGSSDSDSGSASSESESESSSSESESDRDERRKKKRRRRN

NT seq 2643 nt +upstreamnt +downstreamnt
atggctagacggcacagtggtgaatcgagtgatgatgatgtgaggggtggaagagataag
taccgtcagcatagaagtaaaagcgaatcgaggtcaaacaatcatcttgagcagggtgag
attgattcctcagattctgatagagataatagaacaaagagacaagggaaacgggatgat
gagaaggaaagggaaaggtccagtgagagggttcccagtgatagacatggaaggtggcgg
ggtgatcgtcaagatagggatcgacacacttctgatgaagacggtgaggtggcagagaaa
gacagggatgggcaagaaagggaaaggaaaaatgaaaatgggaacagacaacgtgaaagg
gatcccagtgatagatatggaaggtggcggggtgatcgtcaagatagggatgtacaaact
tctgatgaagatggtgagctggccgagaaagacaggggtgggcaagaaagggaaaggaaa
aatgaaaatgggaacagacaacgtgaaaatgggaatggtgatagggggagagaaaataga
agttctgaagatgatgagcgactgaagagataccgacatgagagtggacatagaaggcgg
gaggacgaggatggtcgtagaaacagggacaggcattcacgtcactactctgagcgcagg
gatgaaagggaagagcgcagaacttcagaacggaaaagggatagtagagatgatggtggg
caaagtaggcatagaaaccgggatgacgatggtgagataaagaatcgcagaaataaggag
gtgaatgaaagacgagaagacactgagcgagatgataggatgcttgagaattcaaaacct
caaggacggtcaacattgcaacagggaaatctgaataataatgtggcaaatttgggaaag
agtggtggggtttatattccgccctataagttggcccgaatgatgaaagaggtcgaagat
aaaagtagcgtcgagtatcaacgcttgacatgggatgccctccgaaagagtatcaatggg
cttgtgaacaaggtcaatgctgcaaacattaaaaatataattccagaaatttttgcagag
aatctcattcgtggaagaggtctcttttgtcgatcctgtatgaagtcacagatggcatct
ccaggatttacagatatctttgctggcttggttgctgttgttaacaccaagtttcctgag
gttggtgaacttctgctgagaagaatcgtcttgcagcttaagagagcatttaagcggaac
gacaagccacaactactagctgctgtcaaatttatcgcgcatctcgtcaaccagcaagtg
gctcatgagattatagcattggaattgcttactgtgctgctggagaaccctaccgatgac
agtgttgaagttgctgttggctttgtcacagagtgtggatcgatactgcaagacctttca
cctaaagggctccatggcatctttgagcgctttcgtggaattcttcatgaaggagaaatt
gacaaacgagttcagtttttgatcgaaggcttatttgcattacgaaaagcaaaatttcag
gggcacccagctgttcgtccagaactggaccttgttgaacaagaagaccagttaactcat
gagatttctcttcaagaggagataaatccagaaattacccttgatattttcaagcctgat
cctgatttcattgagaatgagaagcgctatgaagatgtgaagaaaacaattcttggtgaa
gactctgaagaggaaggttctgatgcagcttcagatggtgaggatgatgatgatgaggag
gaggacgaagatgatgatgaggaggaggacgagcaggaaatgaaaataagagatgagact
gagacaaatcttgtgaatcttcgaaggacaatatatctgactatcatgtccagtgtagat
tttgaggaagcaggtcataagctccttaagattaagcttgagccaggccaagagatggag
ctatgtgtcatgcttttggaatgttgcagtcaggagagaacctacctccgctattatggt
ctcttgggacagcggttctgcatgatcaacagaatccaccaggaaaattttgagaaatgt
tttgtccagcagtattcaatgattcaccggcttgaaacaaacaagctacgtaatgtagcc
aagttttttgcgcatttactgggaacagatgcccttccgtggcattgcttagcctatata
cggttaactgaagaggataccacttcttcttctcgtatttttatcaagatccttttccag
gaattgtcagagcatcttggtatccgtctgcttaatgagcggttgactgatcctgcaatg
caagactcttatgaatctattttcccaagggataatcccaagaacacccgatttgctatt
aactttttcacatccattgggcttggcggcatcactgagaacctgcgtgagtatttgaag
cacatgccacgccttattatgcaacaacaaaaagcagcgtcagatgaagaatccgacagt
tctggttcatcggattcggactcagggtcagctagttctgagtcagaatcagaatcatca
agctctgaaagtgaaagtgatcgcgatgaaagacgcaagaagaaacgtaggaggagaaat
taa

All links

Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (6)   

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