KEGG   Ricinus communis (castor bean): 8267378
Entry
8267378           CDS       T01087                                 
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
rcu  Ricinus communis (castor bean)
Pathway
rcu03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:rcu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    8267378
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rcu03400]
    8267378
DNA repair and recombination proteins [BR:rcu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     8267378
SSDB
Motif
Pfam: Tyr-DNA_phospho FHA FHA_2 Ty4_M
Other DBs
NCBI-GeneID: 8267378
NCBI-ProteinID: XP_015574204
UniProt: A0ACL1FPQ5
Position
5:31220471..31225176
AA seq 653 aa
MSYSQKIGFLVPLKLNLEEDTSIPKISLSEGPNAIGRSHVSVSDKRLSRNHLSLTTSVDG
SAFLTPEGTNPVVIKSGDQRKKLSPGEKASINSGDVIELIPGHHFFKYEVLSNHNINPSS
SSPNTPKRHSNNESDQPTRKKARHVASSSSKGEGECNGAKNSEEAIGKFNVNDDKLPLTF
RLMKVKGLPAWANTSCVSITDVIQGDIVFAVLSNYMVDIDWLMSACPALAKVPNVLVLHG
EGDGTLEHMKRTKPANWILHKPPLPISFGTHHSKAMLLVYPRGMRIIVHTANLIYVDWNN
KTQGLWMQDFPWKDEKSQTKGCGFENDLVDYLNTLKWPEFTVKLPALGSFTINPSFFKKF
DYSTAAVRLIASVPGYHTGPNLKKWGHMKLRSVLQECTFRKEFKNSPLAYQFSSLGSLDA
KWMTELATSLSSGLSEDRTPLGLGEPRIIWPTVEDVRCSLEGYAAGNAIPSPLKNVEKDI
LKKYWSKWKATHSGRCRAMPHIKTFTRYNGQKLAWLLLTSANLSKAAWGALQKNNSQLMI
RSYELGVLFLPSSYKNHGCRLSCTDHGARSEDEYGLLADSEEPKTELVTLMWQGPKDPSS
QVIPLPVPYELPPQPYSSEGEDVPWSWDRRYSKKDVYGQVWPRLVQLYTSLDS
NT seq 1962 nt   +upstreamnt  +downstreamnt
atgtcttactctcagaagattgggtttctagttcctcttaaactcaatttagaagaagac
acttcaattccaaaaatatctctctccgaaggccctaacgccataggccgcagccacgtg
tccgtctccgataaaagactcagccgcaaccacctctctttaaccacgtccgtcgatggc
tctgcctttttaactcccgaaggtaccaatccggttgtcattaaatccggtgatcagaga
aagaagttgagtcctggagagaaagcgtcgataaacagcggcgacgttatagagttaata
cctggtcaccatttcttcaaatacgaggttttgtctaatcacaatattaatcctagctca
tcttctcctaatacaccaaagagacattctaacaatgaaagcgatcaacctactcggaag
aaggcacgtcatgttgctagcagcagctcaaagggtgagggagaatgtaatggagctaaa
aatagtgaggaggcaattggtaaatttaatgtcaatgatgataaattgccattaacattt
cggctaatgaaagtgaaaggattaccagcttgggctaatacttcttgcgtttctataact
gatgtaattcagggggatattgtttttgctgttctttcaaattacatggtggatattgat
tggttgatgtctgcatgtccagcacttgcaaaagtacctaacgtcttggttcttcatggg
gagggcgatggtacacttgaacatatgaagagaaccaagcctgcaaattggattctgcat
aaacccccactgcccatttcgtttgggacacaccattctaaggccatgcttcttgtctat
ccacgaggaatgagaatcattgtacatactgctaatttaatatatgtcgactggaacaac
aaaacccaaggcttatggatgcaagattttccctggaaggatgaaaagagtcaaaccaaa
ggatgtggattcgaaaatgacttggttgattatcttaatacattgaagtggccagaattc
actgttaagttaccagcccttggtagcttcactatcaacccttcctttttcaagaagttt
gattatagcactgcagcggttaggttaattgcatctgttcctgggtatcatactgggccc
aacctgaaaaagtggggacatatgaaattacggagtgttctccaggaatgcaccttcaga
aaggaatttaagaattctcctcttgcatatcagttctcttcccttggttcgctggatgca
aagtggatgactgagctggctacctcattgtcatctggactctcagaagatagaacacct
cttggtcttggcgagcctagaataatatggcctacagtggaagatgtcagatgctcttta
gagggttatgcagctggaaatgccatcccaagtccattgaagaacgtggagaaagatatt
ttaaagaagtattggtcaaaatggaaggctacacacagtggccgctgccgtgcaatgcca
catataaagactttcactcgctataatggtcagaaacttgcttggttattgctaacatca
gcaaatctaagcaaagcagcctggggggctttgcaaaagaataattctcagttgatgatt
cgttcctatgagctgggggtgctcttcttaccatcttcctataaaaatcatggttgtagg
ctttcttgtacagaccatggagctagatcagaggatgaatatggattattagcagattct
gaagagccgaaaacagaactagtgactttgatgtggcaaggacctaaagatccatcatcc
caagtaattccactgcctgtaccttatgagctgcctcctcaaccatactcttccgaaggt
gaagatgttccctggtcttgggaccggcgatacagcaagaaggatgtttatggtcaagtt
tggcctaggcttgtacagctttatacttctctggattcttga

  All links  
Gene (12)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (4)   
   Pfam (4)   
All databases (27)   

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