KEGG   Rhodoferax sediminis CHu59-6-5: EUB48_12485
Entry
EUB48_12485       CDS       T06165                                 
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
rhf  Rhodoferax sediminis CHu59-6-5
Brite
KEGG Orthology (KO) [BR:rhf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:rhf03009]
    EUB48_12485 (rlmD)
Enzymes [BR:rhf01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     EUB48_12485 (rlmD)
Ribosome biogenesis [BR:rhf03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    EUB48_12485 (rlmD)
SSDB
Motif
Pfam: tRNA_U5-meth_tr TRM5-TYW2_MTfase Methyltransf_31 TRAM Methyltransf_25
Other DBs
NCBI-ProteinID: QDL38006
UniProt: A0A515DC78
Position
complement(2587920..2589341)
AA seq 473 aa
MTDFTDKKSNHPADWLLVESLDMEAQGVAHKPDGKVVFIEGALPFELVTANVNRKKSSFE
QATVAATHRESSQRVKPVCPHFGLHEGACGGCKMQHLHIGAQVAVKQRVLEDNLWHLGKV
KPDNILRPIEGPAWGYRYRARLSVRHVRKKDAVLVGFHERKSRYVADMLECHVLPPKVSA
LLLPLRGLIGAMQAREACPQIELAMGDRGGDDDDVIALVLRHLEPLGTADIDLLQAFASA
HRGVQWWLQPGGPQTAHLLQEGGAQLAYTLPEFGITMPFKPTDFTQVNPAINRVLVSRAL
RLLDAQRHERVIDWFCGLGNFSLPLATQAGAVLGVEGSETLVARACQNFELNRAAALEGS
SLSATEFVARNLFGMTPALLMADGAADKWLVDPPREGAFALFKALADLQQQPELRGRWTP
PTRIVYVSCNPATLARDANVLVHLAGYRCAAAGVVNMFPHTAHVESMAVFELA
NT seq 1422 nt   +upstreamnt  +downstreamnt
atgaccgatttcaccgacaaaaaatcaaaccatcccgccgactggctgctggtcgaatcg
ctcgacatggaggcccaaggcgtggcccacaagcccgacggcaaggtcgtgttcatcgaa
ggggcgctgccgttcgaactggtgacagccaacgtcaaccgcaagaagagcagcttcgag
caggccacggtcgcggccactcaccgcgaatcatcgcagcgcgtcaagcctgtctgccct
cattttggcttgcatgaaggcgcctgcggcggctgcaagatgcagcatctgcatatcggt
gcgcaggtggccgtcaagcagcgcgtgctggaagacaacctgtggcaccttggcaaggtc
aagcccgacaacatcctgcgcccgatcgaggggccggcctggggctatcgctaccgggcg
cggctctcggtgcgccatgttcgcaagaaagacgccgtgctggtggggtttcatgagcgc
aagagccgctacgtggccgacatgctggagtgccacgtcctgccgccaaaggtcagcgcg
ctgctgctgccgctgcgcgggctgattggcgcgatgcaggcgcgcgaggcctgcccgcaa
attgaactggcgatgggcgataggggcggcgacgatgacgacgtgattgcgctggtgctg
cggcacctggagccgctgggcaccgcggatatcgacctgctgcaagcctttgcgagcgcc
catcggggcgtgcagtggtggctgcagcccggcggcccgcaaacggcacatttgctgcag
gaggggggcgcccaactggcctacacgttgcccgagttcggcatcaccatgccgttcaag
ccgaccgacttcacgcaggtcaatccggccatcaaccgcgtgctggtgagccgtgcgctg
cgactgctggatgcgcaaaggcacgagcgcgtgatcgactggttttgcgggctgggcaat
ttctcgctgccgctggcgacccaggccggcgcggtattgggcgtcgagggcagcgaaacc
ctggtggcgcgcgcctgtcaaaattttgagctaaatcgggctgcggcccttgaaggctct
tcgctatcagctactgaatttgtagcgcgcaacctgttcgggatgacgccggcgctgctc
atggcggatggcgcggccgacaagtggctggtggaccccccgcgtgaaggcgcgtttgca
ctgttcaaggcgctggccgatttgcagcagcagcccgaactgcgcggcagatggacgccg
cctacgcgcattgtctatgtcagctgcaacccggccacgctggcgcgcgacgccaacgtg
ctggtgcacctggccgggtatcgctgtgcggcggcgggggtggtgaacatgttcccgcat
acggcgcatgtggagagcatggcggtgttcgaactggcataa

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (7)   

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