KEGG T10209: KZJ41

Rhodococcus sp. 11-3: KZJ41_00040

Entry

KZJ41_00040       CDS       T10209

Symbol

gyrB

Name

(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

rhou Rhodococcus sp. 11-3

Brite

KEGG Orthology (KO) [BR:rhou00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rhou03032]
    KZJ41_00040 (gyrB)
   03400 DNA repair and recombination proteins [BR:rhou03400]
    KZJ41_00040 (gyrB)
Enzymes [BR:rhou01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     KZJ41_00040 (gyrB)
DNA replication proteins [BR:rhou03032]
Prokaryotic type
  DNA Topoisomerases
   KZJ41_00040 (gyrB)
DNA repair and recombination proteins [BR:rhou03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      KZJ41_00040 (gyrB)

SSDB

Motif

Pfam:

DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c RE_XamI HATPase_c_3

Other DBs

NCBI-ProteinID:

USC15408

Position

8321..10354

AA seq 677 aa
MAAQKSNKSNSEYGASSITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMA
GHATKVEVTLLEDGGVQVVDDGRGIPVGMHASGIPTVEVVLTQLHAGGKFDSDAYAVSGG
LHGVGISVVNALSTRLEVEIDNDGYHWEQTYLSSKPGELIRGEPTRATGTTVRFWSDPDI
FETTTYNFETVARRLQEMAFLNKGLTITLTDERVAPEEVTDEVVSELAEAPKKAEEQEQA
EAEQHHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGHELEVAMQWNSGYS
ESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKDKDPNLTGDDIREGLAAII
SVKVGEPQFEGQTKTKLGNTEVKSFVQRACNEHLSHWLEANPADAKTIVTKAVSSAQARV
AARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGSAKSGRDSMYQAI
LPLRGKIINVEKARIDRVLKNNEVQAIITAFGTGIHDEFDIAKLRYHKIVLMADADVDGQ
HIATLLLTLLFRFMRPLVEHGHVYLAQPPLYKLKWQRSEPEFAYSDRERDGLLERGLAAG
KKINKDDGIQRYKGLGEMNAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVEA
RRSFITRNAKDVRFLDV

NT seq 2034 nt +upstreamnt +downstreamnt
gtggctgcccagaagtcgaacaagagcaacagtgagtacggtgcttcctccatcaccgtc
ctcgagggtctcgaggcggtgcgcaagcgccccggcatgtacatcggttccaccggtgag
cgcggcctgcaccacctgatctgggaggtcgtcgacaactcggtcgacgaggcgatggcc
ggccatgccaccaaggtcgaggtgaccctcctcgaggacggcggcgtgcaggtcgtcgac
gacggccgtggcatccccgtcgggatgcacgcctccggcatcccgaccgtcgaggtcgtg
ctgacccagctgcacgcgggcggcaagttcgattccgatgcctacgccgtctccggcggt
ctgcacggcgtcggcatctcggtggtcaacgcgctgtccacccggctggaggtggagatc
gacaacgacggctaccactgggagcagacgtacctgtcgtcgaagcccggcgaactgatc
aggggcgagcccacacgggccaccggcaccaccgtccggttctggtcggacccggacatc
ttcgagaccacgacctacaacttcgagacggtcgcgcggcgcctgcaggagatggccttc
ctcaacaagggcctgacgatcacgctgaccgacgagcgggtcgcccccgaggaggtcacc
gacgaggtcgtcagcgaactcgccgaggcaccgaagaaggccgaggagcaggaacaggcc
gaggccgaacagcatcacaaggtcaagacccgcgtctaccactacccgggcggcctcgag
gactacgtgcggcacatcaaccgcaccaagcagccgatccacaactcggtcgtcggcttc
accgcgaagggcaccggccacgagctcgaggtcgcgatgcagtggaactcgggctactcc
gagtcggtccacaccttcgccaacacgatcaacacccacgagggcggcacccacgaggag
ggcttccgcgcggccctgacctcggtggtcaacaagtacgcgaaggacaagaagctcctc
aaggacaaggacccgaacctcaccggcgacgacatccgcgagggactggccgcgatcatc
tcggtcaaggtcggcgaaccgcagttcgagggccagaccaagaccaagctcggcaacacc
gaggtcaagtcgttcgtgcagagggcctgcaacgagcacctgtcgcactggctcgaggcg
aacccggccgacgcgaagaccatcgtgacgaaggcggtctcgtccgcgcaggcccgcgtc
gccgcccgcaaggcgcgcgagctggtccggcgcaagtccgccaccgatctcggcgggctg
cccggcaagctggcggactgccggtcgaacgacccgagcaagtccgagatctacatcgtc
gagggcgactccgccggtggctccgcgaagtcgggacgcgactcgatgtaccaggcgatc
ctgccgctgcgcggcaagatcatcaacgtcgagaaggcgcgcatcgatcgcgtgctgaag
aacaacgaggtccaggcgatcatcaccgccttcggcaccggtatccacgacgagttcgac
atcgcgaagctgcgctaccacaagatcgtgctgatggccgacgccgacgtcgacggccag
cacatcgccacgctgctgctgacgctgctgttccgcttcatgcgtccgctggtcgagcac
ggccacgtgtacctggcgcagccgccgttgtacaagctcaagtggcagcgttccgagccc
gagttcgcgtactccgaccgggagcgtgacggcctgctcgagcgcggtctcgccgccggc
aagaagatcaacaaggacgacggcatccagcgttacaagggtctcggcgagatgaacgcc
aaggaactgtgggagaccaccatggatcccagcgtgcgcgtgctgcgtcaggtgacgctc
gacgacgcggccgcagccgacgagctgttcagcatcctgatgggcgaggacgtcgaggca
cgtcgcagtttcatcacccgtaacgccaaggacgttcgcttcctggacgtctga

All links

Gene (1)   
   NCBI-PROTEINID (1)   
Protein domain (6)   
   Pfam (6)   
All databases (7)   

Download RDF

DBGET integrated database retrieval system