KEGG   Rhizophagus irregularis: OCT59_026400
Entry
OCT59_026400      CDS       T10295                                 
Name
(RefSeq) pre-mRNA-splicing factor cwc22
  KO
K13100  pre-mRNA-splicing factor CWC22
Organism
rie  Rhizophagus irregularis
Brite
KEGG Orthology (KO) [BR:rie00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rie03041]
    OCT59_026400
Spliceosome [BR:rie03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    OCT59_026400
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    OCT59_026400
SSDB
Motif
Pfam: MA3 MIF4G
Other DBs
NCBI-GeneID: 36873532
NCBI-ProteinID: XP_025187214
Position
6:complement(3054676..>3057318)
AA seq 573 aa
MSSFIETEQKVLVNTRAGGVYIPPARLREMQQTITDKSSKEYQRITWEALKKSINGLINK
VNTSNIKNIVFELFNENLIRGRGLFARSIMKAQSASLPFTPVYSASVAIINTKLPQIGEL
VLTRLIVQFRKAYRRNDKTTCLATTSFIAHLCNHLVAHEIVALQILVLLLEHPTSDSVEV
AVGFMRECGAHLAEVSPKANNDVFDRFRTILHEANVDKRVQYMIEVLFQIRKDKYKDNPP
IPSELDLVKEDDQITHHISIDDELDVEETLGVFNFDPDYLENEEKYKEIKSQILGEDSDD
DDDGESGTDDSDDEDEDNESEEELAKKMEIHDNTNTNLITLRKTIYLTIKSSLDFEECCH
KLMKLNIQEGQEMELCNMIIECCSQERTYEKFFGLTGERLAKINLVWAKSFEKCFVQYYE
TIHRYETNRLRNVSKYFGHLIASDAISWEVFSVIKLTEDSTTSSSRIFIKILFEELTGTL
GIPKLKVRLNDEAMCHYFDGLFPKDNPRNTRFAINFFTSIELGQLTEGLREHLVNAQKLI
ATEKRKRVESDSSSDDSDDSSDSSDSSSSDSSD
NT seq 1722 nt   +upstreamnt  +downstreamnt
atgtcgtcgtttatagagactgaacagaaagtgctcgttaatactagagcgggtggtgta
tatattccacccgctcgattacgggagatgcaacaaacgataaccgataaatctagtaaa
gaatatcaaagaattacttgggaagctctaaaaaagagtattaatggtctcattaacaag
gtcaatacttcaaatataaaaaatattgtttttgagttgtttaatgaaaatttaattcgt
ggaagaggtctttttgctagatcgatcatgaaagcacaatcggcttctctaccgtttaca
cccgtttattctgcatcggtagctattataaacacaaagttaccacaaattggtgaacta
gttctcactaggttaattgttcaatttcgtaaagcatataggcgtaacgataagacaact
tgtttagctactacttcttttattgcacatttatgtaatcatctagtagctcacgaaatt
gtcgcattacaaattttagttcttttacttgagcatcctactagtgattcagtagaagtt
gctgtcgggtttatgcgtgaatgtggtgctcacttggctgaggtttcaccaaaagcgaat
aatgatgtatttgatcgatttagaactattcttcatgaagcaaatgtagataaaagagtt
caatatatgattgaagttttatttcaaataagaaaggataaatataaggataatccacca
attccatcagaattagatttggttaaggaagatgatcaaattactcatcatatatcaatt
gatgatgaattagatgttgaagaaactcttggtgtcttcaatttcgatcctgattattta
gaaaatgaagaaaaatacaaggaaataaaatcacaaatattaggtgaagattctgatgat
gatgatgatggagaatcaggtactgatgatagtgatgacgaagatgaagataatgagagc
gaagaggaattagcaaagaaaatggaaattcatgataatacaaatacaaacttgataacc
ttacgtaaaacgatatatctaactattaagtcaagtcttgactttgaagaatgttgtcac
aaacttatgaaattaaatattcaagaaggacaagagatggaactttgcaacatgataatt
gaatgttgttctcaagaacgtacttatgaaaagttttttggtcttacaggtgaacgtctt
gcaaaaataaatttggtttgggctaaatcttttgaaaaatgttttgttcaatattatgag
acaattcatcgatacgaaacgaatcggttaagaaacgtatcaaaatattttggacacctt
atagcatcagatgctatttcttgggaagtttttagtgtaattaaattgacagaagattca
accacatcaagttctcgaatttttattaaaatattatttgaagaactcactggtacttta
ggtataccgaaacttaaagtgagattaaatgatgaagcaatgtgtcattatttcgacggt
ctttttccaaaggataatccacggaatactcgttttgcaatcaacttttttacaagtatt
gaattaggtcaattaactgagggtttaagagagcatttggtgaatgcacaaaaactcatt
gcaacagaaaaacgtaaacgagtagagagtgatagttcttcagatgattcagatgattcg
tcagattcgtcagattcgtcatcatcagactcatctgattga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (6)   

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