KEGG T01003: 134479418

Rattus norvegicus (rat): 134479418

Entry

134479418         CDS       T01003

Name

(RefSeq) pre-mRNA-splicing factor CWC22 homolog

K13100

pre-mRNA-splicing factor CWC22

Organism

rno Rattus norvegicus (rat)

Brite

KEGG Orthology (KO) [BR:rno00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    134479418
Spliceosome [BR:rno03041]
Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    134479418
Complex C
   U4/U6.U5 tri-SnRNP related factors
    134479418

SSDB

Motif

Pfam:

MA3 MIF4G Cnd1 PRP38 DUF7026

Other DBs

NCBI-GeneID:

134479418

NCBI-ProteinID:

XP_063118848

Position

6:complement(105295814..105298892)

AA seq 694 aa
MKSSVAHMKSSGHDRRESHNSYHRRSSSPEDRYTEQDRSPRDRDYSDYSRSDYERCRRGY
SYDDSMELRSRDREKRRERERDADHRKRSRKSPSPERRSPDRGVSQSSTQEEPTSKKKKK
DEQDPLLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSISGLINKVNISNIS
IIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHLYAALVAIINSKFPQIGELILKRLII
NFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKE
CGLKLTQVSPRGINAIFERLRNILHESKIDKRVQYMIEVMFAVRKDGFKDHPVILEGLDL
VEEDDLFTHMLPLEEDYNPEDVLNVFKMDPNFMENEEKYKVIKKEILDEGDSDSNTDQEA
GSSEDEEEEEDEEEGEEEEGGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLK
MEFAESQTKELCNMILDCCAQQRTYEKFFGLLAGRFCMLKKEYMESFESIFKEQYDTIHR
LETNKLRNVAKMFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPK
LNARLKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQK
PDAEQKKPVLTSSSSESSSGSDSSDSDSDSSESS

NT seq 2085 nt +upstreamnt +downstreamnt
atgaaaagtagtgtggcacacatgaaatcctctggtcacgacagaagggagagccacaat
tcataccacaggaggagctcctccccagaagacagatatacagaacaagaccggtccccc
cgggatagagactattctgattacagccggtcagactatgagcgatgcagaagaggatac
tcttacgatgacagcatggaattacgaagcagggaccgagagaaacgcagagagagagaa
agagacgcagaccatcgcaaacggtcccggaaatccccgtctccagaaaggaggagccca
gaccgaggagtgagccagagttctactcaggaagaaccgacatcgaagaagaagaagaag
gatgagcaggacccgctgctcacccgcaccgggggagcgtatattcctcctgcaaagctc
aggatgatgcaggagcagattacggataaaaacagcttagcataccagaggatgagctgg
gaggctctgaagaaatccatcagtggtctcatcaacaaggtcaacatctcgaatataagc
atcattatccaagagctccttcaagagaacatcgtcagagggagaggactgctgtctaga
tctgttctgcaagcacagagcgcttctcccatcttcactcacctttatgcagctttggtg
gcgataatcaactcaaagttcccacagattggagaactgatcctcaagagactaattatt
aattttcggaaaggataccgaaggaacgataagcaactttgcctgactgcttcaaaattt
gtggcacatctaattaaccaaaatgtggcacatgaggttctgtgcctggagatgctcact
ttgctgctagagagaccaacagatgacagtgttgaagtagctatcggcttcctcaaggag
tgtggtctcaaattaacccaggtgtcaccaaggggaatcaatgcaatctttgaacgcctg
cgaaacattctgcatgagtccaagattgacaaaagagtccagtacatgattgaagtgatg
tttgctgtacggaaggatggattcaaggaccaccctgttattctggaaggacttgactta
gtggaagaggatgatctgtttacacacatgctccccttggaggaagactacaatccagaa
gatgttcttaatgtttttaagatggatcctaattttatggagaatgaagagaagtacaag
gttattaaaaaagaaatccttgatgaaggagacagtgactcaaacacagaccaggaagca
ggaagtagtgaagatgaggaggaggaggaagacgaggaggaaggagaagaggaggaagga
ggacaaaaagtaactattcatgataaaacagaaatcaacctagtctcgtttcgccgtaca
atatatcttgctattcagtcaagtttagattttgaagaatgtgcacacaagttgctgaaa
atggagtttgctgagagccaaacaaaagaactctgcaacatgatacttgattgctgtgcc
caacaaagaacctatgaaaaattttttggcctgttagctgggcggttttgtatgctgaaa
aaagagtacatggaatcatttgaaagtatattcaaggaacagtacgataccatccaccgc
ctagagacaaacaaattgagaaatgttgctaagatgttcgctcaccttttatacacagac
tcacttccgtggagtgttctcgagtgtataaagctgagtgaagagacgacgacatcatcc
agtaggatttttgtcaagatcttcttccaggagctgtgtgaatacatgggtcttcctaaa
ctgaatgcgaggttaaaggatgaaactcttcaaccgttctttgaaggactgttaccccga
gacaacccacgcaacacccggtttgccatcaacttcttcacttccataggtctcggagga
ttgacggatgaacttcgagaacatctgaaaaatacgcccaaggtcattgtagcccagaaa
ccagacgctgagcagaagaaaccggtcctgacatcttcatcttcagagtcttcctcgggg
tctgattcctctgactcagattctgacagcagcgagagcagctaa

All links

Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (9)   

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