KEGG   Rattus norvegicus (rat): 64470
Entry
64470             CDS       T01003                                 

Gene name
Ddb1
Definition
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03420  Nucleotide excision repair
rno04120  Ubiquitin mediated proteolysis
rno05161  Hepatitis B
rno05170  Human immunodeficiency virus 1 infection
rno05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    64470 (Ddb1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    64470 (Ddb1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    64470 (Ddb1)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    64470 (Ddb1)
   05161 Hepatitis B
    64470 (Ddb1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    64470 (Ddb1)
   03400 DNA repair and recombination proteins [BR:rno03400]
    64470 (Ddb1)
Ubiquitin system [BR:rno04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     64470 (Ddb1)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      64470 (Ddb1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      64470 (Ddb1)
SSDB
Motif
Pfam: MMS1_N CPSF_A Beta_propel
Other DBs
NCBI-GeneID: 64470
NCBI-ProteinID: NP_741992
RGD: 621889
Ensembl: ENSRNOG00000020715
UniProt: G3V8T4
Position
1
AA seq 1140 aa
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPSRE
TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC
LDITPLGESNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcgtacaactacgtcgtaacggcgcagaagcctaccgcagtgaacggctgtgtgacc
ggacactttacttcagcggaagacttgaacctgttgattgctaaaaacacaagattagag
atctatgtggtcaccgcagaaggcctacggccagtcaaagaggtggggatgtatgggaag
atcgcagttatggagctcttcagacccaagggggagagtaaagacctgctgttcatcttg
actgctaagtacaatgcctgcatcctggagtataagcagagtggtgaaagcattgatatc
attacaagggcccatggcaatgtccaggaccgtattggtcgcccctcagagactggcatc
attggcatcattgaccctgagtgccgtatgattggcctccgactctacgatggccttttc
aaggtcattccactagaccgagacaataaagagctcaaggcctttaacatccgcctagaa
gaattgcatgtcatcgatgtcaagttcctgtatggttgtcaagcgcctaccatttgcttt
gtctaccaggatcctcaggggcggcacgtgaaaacctatgaggtgtctcttcgggagaag
gagttcaacaagggcccttggaagcaggagaatgtagaagccgaagcttcaatggtgatc
gcagtcccggagccttttggaggtgccatcatcattggacaggagtcaattacctatcac
aatggtgataaatacctggcaatcgctcctcctatcattaagcaaagcactattgtgtgc
cataaccgggtggatcctaatggctcacggtaccttctgggagatatggaaggacggctt
ttcatgctgctcttagagaaggaggagcagatggatggcaccgtcaccctcaaggacctt
cgagtggaactccttggagagacctccattgcagagtgcctaacatatcttgataacggt
gttgtgtttgtcgggtctcgcctgggtgattcccagctcgtaaagctcaatgtcgacagc
aatgaacaaggctcctatgtagtggctatggaaacctttaccaacttaggacccattgtg
gatatgtgtgtggtggacctggagaggcagggacagggtcagctggtcacttgctctgga
gctttcaaggaaggttccttgcggatcatccggaacggaattggaatccatgagcatgcc
agcattgacttaccaggcatcaaaggtttatggccactgcggtctgacccaagtcgggag
actgatgacactttggtactctcttttgtgggccagacaagagttctcatgctaaatgga
gaggaagtggaagaaacagaattgatgggctttgtggacgatcagcagactttcttttgc
ggcaatgtggctcatcagcagcttatccagatcacctcagcgtctgtaaggttggtctct
caagagcccaaagctttggtcagcgagtggaaggagccccagggcaagaacatcagtgtg
gcctcctgtaacagcagccaggtggtagttgctgtgggaagggcactatactatcttcag
atccatcctcaggagctccggcaaatcagccacacagagatggaacatgaagtggcttgc
ttggatatcaccccactaggagagagcaatggcctgtccccactttgtgccattggtctc
tggacagatatttcagctcgtatcttgaagctcccatcctttgaactactgcacaaggag
atgctgggtggagagatcatccctcgatctatcctgatgaccacttttgagagcagccac
tacctcctttgtgccttgggagatggggctctcttctactttgggctcaacatagagaca
ggcttactgagtgaccgtaaaaaggtgactttgggtacccagcccacggtgttgaggaca
ttccgttctctttctaccaccaacgtctttgcttgctcagaccggcccactgtcatctat
agcagcaatcataagttggtcttctccaatgttaacctcaaggaggtgaactatatgtgt
cctctcaactcagatggctatcctgacagtctggcattggccaataacagcactctcacc
attggcaccatcgatgagatccagaaactccatattcgcacggttcctctctatgaatct
cccaggaagatctgttatcaggaagtgtctcagtgctttggggtcctttccagccgcatt
gaagttcaagataccagtggaggcactactgctttgaggcccagtgctagcacccaggcc
ctgtccagcagcgtcagctccagcaagctcttctctagtagtacggctcctcacgagacc
tcctttggagaagaggtggaagtgcacaacctcctcatcattgaccagcatacttttgaa
gtgcttcatgcccatcagtttctacaaaatgagtatgccctcagcctggtctcctgcaaa
ttgggtaaagaccccaacacatacttcattgtgggcacagccatggtatatcctgaagag
gcggagcccaaacagggtcgtattgtggtcttccagtattcggatggaaaactacagact
gtggccgaaaaggaagtaaagggggctgtgtactctatggtggagtttaatgggaagctg
cttgctagcatcaacagcacggtgcggctctatgaatggaccacagaaaaggaacttcgc
actgagtgcaatcactacaacaacatcatggccctgtacctgaagaccaagggcgacttc
atcctggtgggcgacctcatgcgatcagtgctactgcttgcctacaagcctatggaagga
aactttgaagagattgcccgagactttaatcccaactggatgagtgcagtggagatcttg
gatgatgacaattttctgggagctgagaatgcctttaacttgtttgtgtgtcagaaggac
agtgctgccaccactgatgaggagcggcagcacctacaggaggttggtctcttccacctg
ggcgagtttgtcaatgtgttctgccatggctccctagttatgcagaatctgggcgagact
tctacccctacccagggctcggtgctctttggcacagtcaacggcatgatagggctggtg
acctcactgtcggagagctggtacaacctcctgttggacatgcagaaccgactcaataag
gtcatcaaaagtgtgggcaagattgagcactccttctggagatcctttcacactgagcga
aagacagaaccagccacaggcttcatcgatggtgacctgattgaaagtttcctagatatc
agccgccccaagatgcaggaggttgtggcaaacttgcagtatgatgatggcagtggtatg
aagcgggaggcaactgcagatgacctcatcaaagtcgtggaggagctaactcggatccat
tag

DBGET integrated database retrieval system