LOCUS NC_043037 6924 bp ss-RNA linear VRL 28-JUN-2019
DEFINITION Umbre virus strain IG1424 RNA-dependent RNA polymerase gene,
complete cds.
ACCESSION NC_043037
VERSION NC_043037.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Umbre virus
ORGANISM Umbre virus
Viruses; Riboviria; Orthornavirae; Negarnaviricota;
Polyploviricotina; Bunyaviricetes; Elliovirales; Peribunyaviridae;
Orthobunyavirus; Orthobunyavirus umbreense.
REFERENCE 1 (bases 1 to 6924)
AUTHORS Shchetinin,A.M., Lvov,D.K., Deriabin,P.G., Botikov,A.G.,
Gitelman,A.K., Kuhn,J.H. and Alkhovsky,S.V.
TITLE Genetic and Phylogenetic Characterization of Tataguine and
Witwatersrand Viruses and Other Orthobunyaviruses of the Anopheles
A, Capim, Guama, Koongol, Mapputta, Tete, and Turlock Serogroups
JOURNAL Viruses 7 (11), 5987-6008 (2015)
PUBMED 26610546
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 6924)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2019) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 6924)
AUTHORS Alkhovsky,S.V. and Shchetinin,A.M.
TITLE Direct Submission
JOURNAL Submitted (16-FEB-2015) Lab. of Biotechnology, The D.I. Ivanovsky
Institute of Virology, Gamaleya str., 16, Moscow 123098, Russia
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KP792687.
##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 7.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..6924
/organism="Umbre virus"
/mol_type="genomic RNA"
/strain="IG1424"
/host="Culex bitaeniorhynchus"
/db_xref="taxon:552554"
/segment="L"
/geo_loc_name="India"
/collection_date="14-Oct-1955"
/serogroup="Turlock"
/note="Russian State Collection of viruses:345/2"
gene 44..6924
/locus_tag="FK794_sLgp1"
/db_xref="GeneID:40524599"
CDS 44..>6924
/locus_tag="FK794_sLgp1"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="YP_009664559.1"
/db_xref="GeneID:40524599"
/translation="MLDQENEQALNRLAAAVARANEPAEGKEAYNAILSRRHDYFGQV
FCETIGIPYRNDVRLEDILHECDQTVDTLTNKIPNITPDNFEFRDNILTIIDYKVAVS
DESADYTREKYENAVDAIKHLVDFPIRVCIVRMHPHTRQVTYSDDNFMRRFAHVVYPV
DFTRYTQLTEELKEKFADSPEFMDMIAYGDVTFTANWCQNGCPELYEHPIFKEFLESM
PLKYQKLFEKSLQSSCYTSERWDSNLKEVKSATREEYEDFISRSAKELYETSPDYSEP
SREEILKGWEEMTERVKEQREVSSNINDQKPSAHFIWAENNPELPTANSAKICAISKL
LQSINIESSFAEDFKRLGKLFDFSEDIPGYERHCEQLKRQARSNPGQVKNKKLDPKKI
GNALVLWEQQFLLSAEEMGKENKLHLLKDFFGVGKHKQFAKKGLDDTETDKPTILDFN
DAEVKRSAELMMQKTKLYLSGKSSLNREHPIASEYLNGIKKCNDETYNVLNAIFQTKY
WQCITDISMLMKNMLSVSQYNRNNTFRIATCANNALYGLIFPSADIKTKDASIVYCIV
AVHKDEKSLFNPGALHATFKVPGGFLSISKSMRLDKKRCHRIVTSPGIFLTIATMLKG
DNPTINLNDVLNFSIFASLNITKSMLSLTEPSRYMIMNSLAVSSHVREYISEKFSPYT
KTLFSVHMVEKIKAGCLNAFKQREKIKTRDIYLTDIDITQKGIQDNRDLCSIWFDGNV
TLKEYLNQIYIVFYLNPKALHEKHHVMIDLLKTVIEIELDQRENVPQPWSDIPKKQTV
NLPILVHSLAKNLLLDTSFAHFLRSRIESRNNFRRTFATISTFTSSKSCLKTGNFHEF
KIKQCQRLKKVNASEAKKHRIANAMFVEEQDQHLEVEHANYELMRKAVPDYVDVLSTK
VFDRLYELYKTGEIDDEPVIHQIFTTMRTHTKFYFTYFNKGQKTAKDREIFIGEYEAK
MCMYLVERIYKERSKVNPDEMISEPGDGKLRVLERKAEQEIRFMVEKMKAKNDEINKE
IEDAKDNYVLNLGKIAALQAQKYKALKLEINADMSKWSAQDVFFKYFWSVCLDPILYP
EEKEHILYFFCNYMQKELVIPDEVICNILDQRKAYPNDIISQITNGLTTNHFNVKRNW
LQGNFNYMSSYAHSTAMSVFKDVIKRAADLLEAEVLIHSMVHSDDNQTSVTLVDNRIC
PRQFTAFVINTFEKICLTFGCQANMKKTYITNHIKEFVSLFNLYGEPFSIYGRFTLTS
VGDCAYIGPYEDLASRISATQTGIKHGCPASQAWLSIAIAQWMTYLTYNMLPGQQNDP
QPILEIDRKQLPLELGGYISCPLSLIALAGLESGNIDFLIKLVNKYIDPRLQREPIQD
QCTDIKNWDISKLSKVEIFKLKVLRYLVLDAEMDNTDIMGETSEMRGRSLLTPRKFTT
AGSLRKLISFEDFQAVQDSEQGVDSIVEYMLQNPALLVTKGETKGDYMNTVLYRYNSK
KFKESLSIQNPTQLFLEQILFSHKPIVDYTGIAEKFSNLNDGTMLEDNPTIKGRMTFT
DAFAMIKKDLSTLKITNEDLEIVLKFIILNDPLTVTAANAHILHVIGHSQPRLGSTAC
VMPEFRNLRMIKHSPALVLKCYSKNTLLLPGVQERDMERDLNHLKTFIETTKLEDKMQ
NRIKKNEDLKKSKDIYFEIKEVTRFYQTCYEYVKSTDYKVKVFILPAKCMTQTDFCAV
LQGSLLEDKKWKLIQHLRPVTAGGHKGEVQPVVSMDFKLAREAVNLLCFFTDSFIDSR
YRRDFLLKACVEMAYKDRPMVTLIEEIKKSKNRTSFLPFLYRIGELTQEDLDAYDAQK
AGGRVTWNHWQSTRSLNMGKIDFQIDTHKTHLHIIGEDQQLVIAELKIPKLTANAITQ
AGYRLLNEKHGFRFETMNEVLVQPRKYYITYQMKSKKQYVYKIFDTATLLYERRNIKQ
YTGREANPIVAVCEVVPMEEEETPALSLGDIEMYNADNESVSILKTSFNESAKMRRAN
LSKMQYFETIGGSMLKIRFINVNALMKDTTLMSLNYDNLVNADLARFSKLLDCDGDTD
SVEDGILCFSNDPMEQTTTEEIDAIPLFKVSYKISAPARLTYKNAIRELLRREITKFM
DAFTFVGPSFDSPENMGFICNICCIIQLLHTNEWSTIMLNCIHICMIYLEKDIRFHKF
LLNRIFFEGLNPASGKLDYKKIKEFVISLKDREMAPWNEIFTKFKQKCVTLLDKEITR
IEQNTNLENTLALDENTDDQSGFLLFEQFTVQIYARVHLFSLVYF"
misc_feature 59..604
/locus_tag="FK794_sLgp1"
/note="Endonuclease domain of segmented negative-strand
RNA virus (sNSV) polymerases; Region:
PDDEXK_RNA_polymerase-like; cd22349"
/db_xref="CDD:411753"
misc_feature order(155..157,209..211,290..292,329..331,335..337,
377..379)
/locus_tag="FK794_sLgp1"
/note="active site"
/db_xref="CDD:411753"
misc_feature 1841..4108
/locus_tag="FK794_sLgp1"
/note="Bunyavirus RNA dependent RNA polymerase; Region:
Bunya_RdRp; pfam04196"
/db_xref="CDD:282102"
ORIGIN
1 acataaacaa tctttaaaat cagtaattga ccgtaaattt aaaatgctag atcaagaaaa
61 cgagcaggct ttaaatagac ttgcagctgc agttgcaagg gcaaatgagc ctgccgaagg
121 taaagaggca tacaatgcta tattgagcag aaggcatgac tattttggac aagtcttctg
181 cgaaactata ggcataccat atagaaatga tgttcgttta gaagatatct tacacgaatg
241 tgaccaaact gtagatactt tgacaaacaa aataccaaat ataaccccag ataactttga
301 gtttagagac aatattttaa ccataataga ttacaaggta gcagttagtg atgaaagtgc
361 cgactatact cgtgaaaagt atgaaaatgc tgttgatgct ataaaacatc tagttgattt
421 tcctattaga gtatgtatag ttagaatgca cccacatact agacaggtta cttactctga
481 tgataatttt atgagacgat ttgcccatgt agtatatcca gttgatttta caagatacac
541 tcaattaact gaagagctta aggagaaatt tgcagatagc cctgaattta tggatatgat
601 agcatacggt gatgtcacct ttactgcaaa ctggtgccaa aatggatgcc ctgaactata
661 tgaacatcca atatttaagg aatttttgga aagtatgcca ttgaagtacc aaaaactatt
721 tgagaaatcc ttgcagagtt cttgctatac ttctgagaga tgggattcca atctcaaaga
781 agtcaagagt gcaactagag aagagtatga agatttcata tctcgatctg caaaggagct
841 ttatgaaaca tctcccgact attcagagcc tagtagagag gagattttga aggggtggga
901 ggagatgacg gaaagagtga aagagcaaag agaagtatct tcaaatatca atgatcaaaa
961 gccaagtgct catttcatat gggctgaaaa caatcctgag ttgccaactg caaattctgc
1021 aaagatatgt gcaatttcaa aacttttaca atcaattaat atagagagct cttttgctga
1081 agactttaaa agattgggta aactattcga cttctctgaa gatattcctg gatatgaaag
1141 acattgtgaa caacttaaaa gacaggctag atcaaatcca gggcaagtga agaacaagaa
1201 gttagaccca aagaaaattg ggaatgcact agttttatgg gagcagcaat ttttattatc
1261 tgcagaagaa atgggaaaag agaataaatt acacttgctt aaggactttt ttggcgtagg
1321 caaacataag caattcgcaa aaaagggctt ggatgacacg gaaacagaca aaccaacaat
1381 cttagatttc aatgatgcag aagtaaaaag atcagcagaa ttgatgatgc aaaaaacaaa
1441 actctacttg tctggaaagt catcactgaa tagagagcat cctatagcat cggaatatct
1501 taatggaata aaaaaatgca atgacgagac atataacgtt ctcaatgcta tctttcagac
1561 aaagtattgg caatgtataa cagatattag tatgttgatg aagaacatgc tttctgtatc
1621 acaatataac agaaataata ctttcaggat tgcaacatgt gctaataatg cactatatgg
1681 acttatcttt ccttcagctg acattaaaac aaaagatgca agcattgtat attgcatcgt
1741 tgcagttcat aaagatgaga aatctttgtt taatccagga gctttgcatg caacttttaa
1801 agtaccaggt ggatttttat caatatctaa atcaatgcga cttgacaaga agcgttgcca
1861 tagaatagtt acaagtccag gtatctttct aacaattgcc actatgctaa agggagacaa
1921 cccaactatc aacttaaatg atgtcctaaa ttttagcatt ttcgcaagct tgaatataac
1981 taaaagcatg ttatcattaa cagagccttc taggtatatg atcatgaact ctctagcagt
2041 ttccagccat gtgcgcgaat acatttctga gaaattttca ccatatacta aaactctatt
2101 tagtgtccac atggttgaga aaattaaagc aggttgctta aatgcattta agcaaagaga
2161 gaaaattaaa actcgagaca tttatttaac agacatagac ataacccaaa aaggaataca
2221 agacaacaga gatctctgca gcatttggtt tgatggcaat gtcaccttaa aagaatatct
2281 aaatcagatc tacattgttt tctatctgaa tccaaaagca ttacatgaaa aacatcatgt
2341 aatgatagat ctactcaaaa cagtgataga gatagaactt gatcaaagag aaaatgttcc
2401 tcagccatgg tctgatatac ccaaaaagca aaccgtcaac ttgcctattc ttgttcatag
2461 cctagcaaaa aacctacttt tagatacttc atttgcacat ttcctgagat ccagaattga
2521 gagccgcaat aattttagac gcacgtttgc tacaatttca acctttacaa gtagtaaaag
2581 ttgcttaaag acaggaaatt tccatgaatt caaaattaaa cagtgtcaaa ggctcaaaaa
2641 agtgaatgca agtgaagcaa agaagcatag aattgcaaat gctatgtttg ttgaggaaca
2701 agatcagcat ttggaggtgg agcatgcaaa ctacgaattg atgaggaaag cagtcccgga
2761 ttacgtagat gttctatcca ccaaggtgtt tgaccgattg tatgaattat ataaaactgg
2821 ggaaattgat gatgaaccgg tcatccacca aatttttact accatgagaa ctcatactaa
2881 attctatttc acttacttta ataaaggcca aaaaacagca aaagaccgag aaatatttat
2941 tggggaatat gaagctaaaa tgtgtatgta cctagtagag agaatataca aagaaagatc
3001 aaaagtcaat ccagatgaaa tgatcagtga accaggggat ggaaaactta gagtattgga
3061 gcgcaaagca gagcaagaaa taagattcat ggttgaaaaa atgaaagcaa aaaatgacga
3121 aataaacaaa gaaattgaag atgcaaaaga caattatgtt ttaaatctag ggaaaatagc
3181 agcactgcaa gcacaaaaat acaaagcgtt gaagctagaa atcaatgcag acatgtcaaa
3241 atggagtgcc caagacgtgt tttttaagta cttttggtct gtttgccttg atccgatcct
3301 ttaccctgaa gaaaaagagc acattttata ttttttctgc aactatatgc aaaaagaatt
3361 ggttatccca gatgaggtta tttgcaatat tttagatcaa aggaaagcat atcctaacga
3421 tataatcagt caaatcacaa acgggttaac aactaatcat ttcaatgtga agaggaactg
3481 gctacaaggc aattttaact atatgtctag ttatgctcac agcacagcaa tgtctgtctt
3541 caaggatgta ataaagcgtg ctgcagattt gctagaagcc gaggttttga tccattctat
3601 ggttcactct gacgataacc aaacctctgt tacattggtt gacaacagaa tatgcccaag
3661 gcaatttaca gcatttgtaa tcaacacatt tgaaaaaatt tgcttaacat ttggctgcca
3721 agctaacatg aaaaagacct acatcaccaa ccacataaag gaattcgttt cattattcaa
3781 tctgtatgga gaaccatttt caatttatgg cagattcaca ttaacatctg ttggtgactg
3841 tgcatatatt ggaccatacg aagaccttgc aagcagaata tcagcaacac agaccgggat
3901 aaagcatgga tgcccggcta gccaagcttg gttatcaatt gctatcgccc aatggatgac
3961 ttacctgaca tacaacatgt taccaggcca acaaaatgac cctcaaccta tattagaaat
4021 agacagaaaa cagttaccac ttgagctggg tggatacatc tcttgccctt tatctttgat
4081 agctttagct gggttagaat ctggaaacat tgacttcttg attaaattgg ttaacaaata
4141 catcgacccc agactccagc gtgagcccat tcaagatcaa tgcacagata taaaaaattg
4201 ggatatctca aagcttagca aagttgaaat atttaaacta aaggtactgc gttatttagt
4261 attagatgca gagatggaca acacagacat catgggagaa accagtgaaa tgagaggaag
4321 atccctactg acacccagaa aatttacaac ggctggatcc ttgagaaaat taatatcttt
4381 tgaagacttt caagcagtcc aagattctga acaaggtgta gactctatag tcgaatacat
4441 gctgcaaaat ccagcattat tagtaacaaa aggagaaaca aagggcgact atatgaacac
4501 agtgctctac agatacaact cgaagaaatt caaggagtca ttatctattc agaaccctac
4561 ccaactcttt ctagaacaaa tcttattctc acacaaaccc attgttgatt atacaggtat
4621 cgcagagaaa ttctcaaatc tcaatgatgg gaccatgctt gaagacaatc caacaataaa
4681 aggcaggatg acgtttacgg atgcttttgc gatgatcaag aaagacctat caacacttaa
4741 gatcactaat gaggaccttg aaattgtgct aaagtttata attttgaatg accctttgac
4801 tgtaactgct gccaatgctc acattttgca tgtaataggc cattcgcaac ctaggctcgg
4861 atcaacagct tgcgtaatgc ctgaatttag aaacttgaga atgattaagc attcacctgc
4921 attagttttg aaatgttaca gtaaaaacac tttattgctg cctggggtgc aagaaaggga
4981 tatggaaaga gaccttaacc atctcaaaac atttattgag actacaaagt tagaggacaa
5041 aatgcaaaat aggatcaaga aaaatgaaga tctaaaaaag tctaaagata tctactttga
5101 aattaaagaa gtaactaggt tttaccaaac gtgctacgaa tatgttaaaa gtaccgatta
5161 caaggtgaaa gtattcatac tgccagccaa atgcatgact caaacagatt tctgtgctgt
5221 gctacagggt tcactattgg aagataaaaa gtggaagctg atacaacacc tcagacctgt
5281 cactgcagga ggacacaagg gtgaagtcca gccagtagtc tccatggatt ttaaattagc
5341 acgtgaggct gtgaatttac tgtgtttctt tactgattca tttatagatt ctagatacag
5401 gagagatttt ctcctaaagg catgcgtaga aatggcctac aaagataggc ctatggtcac
5461 attgatagag gaaataaaaa agtcgaagaa caggacatct ttcttgccat tcttgtacag
5521 aattggagaa ttgactcaag aagatctaga tgcatacgat gctcaaaaag ctggagggcg
5581 agtaacctgg aatcactggc aatcaacaag aagcttaaat atgggaaaga tagatttcca
5641 aatagacacg cacaaaactc accttcatat cattggcgaa gatcaacagc tagtgatagc
5701 cgaactaaaa attcctaaat taacagcaaa tgcaattact caagcaggct acagactctt
5761 aaatgaaaag catggatttc gatttgaaac aatgaatgaa gtcttggttc aaccaagaaa
5821 atattacata acataccaaa tgaaatcaaa aaagcaatat gtctacaaaa tctttgacac
5881 agcaacgttg ctatatgaaa gaagaaacat aaagcaatat acaggtcgag aagcaaatcc
5941 aatagtagca gtctgtgaag tagttccaat ggaggaagaa gaaacccctg ccttaagtct
6001 aggcgacata gaaatgtata atgctgacaa tgaatcagtc agtattttga aaacgtcatt
6061 taatgagagt gcgaagatgc ggcgtgcaaa tttatccaag atgcaatact ttgagaccat
6121 tggtggttct atgttgaaga ttcgatttat caatgtgaat gcactaatga aagatacaac
6181 tctcatgtca ctcaactatg acaatttggt gaatgctgat ttagcaagat ttagcaagtt
6241 gttagactgc gatggcgaca cagatagtgt tgaagatggc atactatgct tttctaatga
6301 cccaatggaa caaactacaa cagaagagat cgatgcaata cctctcttca aagtaagcta
6361 caaaatctca gcacctgcca gactaacata caaaaacgct attagagagc tgttgaggag
6421 agaaataaca aagtttatgg atgcctttac ttttgttgga ccttcttttg attctccgga
6481 aaatatggga ttcatttgta atatatgttg cataatacaa ctcctccaca caaatgaatg
6541 gtctactata atgctgaact gcattcatat ctgtatgatc tatctggaga aagacataag
6601 attccataaa ttcctgctga atagaatatt ttttgagggg ctaaatcctg catctgggaa
6661 attagattat aaaaaaatca aggaatttgt gattagccta aaagatagag agatggctcc
6721 ttggaatgag atatttacaa aattcaagca aaagtgtgtc acgttactgg acaaagagat
6781 aacaagaata gaacaaaata caaaccttga aaacacatta gctttagatg aaaacacaga
6841 tgatcagtct ggattccttc tgtttgaaca attcactgtc caaatttatg caagagttca
6901 tctattctct ctagtctact tcaa
//
