LOCUS       XP_011642988            1161 aa            linear   INV 07-JUN-2018
DEFINITION  collagen alpha-1(XXII) chain isoform X3 [Pogonomyrmex barbatus].
ACCESSION   XP_011642988
VERSION     XP_011642988.1
DBLINK      BioProject: PRJNA276107
DBSOURCE    REFSEQ: accession XM_011644686.2
KEYWORDS    RefSeq.
SOURCE      Pogonomyrmex barbatus (red harvester ant)
  ORGANISM  Pogonomyrmex barbatus
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Altocrustacea;
            Allotriocarida; Hexapoda; Insecta; Pterygota; Neoptera; Eumetabola;
            Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea;
            Formicidae; Myrmicinae; Pogonomyrmex.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_011933725.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Pogonomyrmex barbatus Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1161
                     /organism="Pogonomyrmex barbatus"
                     /db_xref="taxon:144034"
                     /chromosome="Unknown"
     Protein         1..1161
                     /product="collagen alpha-1(XXII) chain isoform X3"
                     /calculated_mol_wt=121905
     Region          29..220
                     /region_name="LamG"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; cl22861"
                     /db_xref="CDD:473984"
     Region          325..386
                     /region_name="Collagen"
                     /note="Collagen triple helix repeat (20 copies);
                     pfam01391"
                     /db_xref="CDD:460189"
     Region          <357..>651
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <579..>764
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          870..917
                     /region_name="Collagen_trimer"
                     /note="Collagen trimerization domain; pfam20010"
                     /db_xref="CDD:466257"
     Region          958..1126
                     /region_name="Endostatin-like"
                     /note="Endostatin-like domain; the angiogenesis inhibitor
                     endostatin is a C-terminal fragment of collagen XV/XVIII,
                     a proteoglycan/collagen found in vessel walls and basement
                     membranes; this domain has a compact globular fold similar
                     to that of C-type lectins; cd00247"
                     /db_xref="CDD:238151"
     Site            order(988,997,1003,1012..1013,1016,1077..1078,1088)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:238151"
     CDS             1..1161
                     /gene="LOC105430905"
                     /coded_by="XM_011644686.2:2399..5884"
                     /db_xref="GeneID:105430905"
ORIGIN      
        1 mlprsllvif aalcatygra dffsgkevvy dlmeasvssm tddnnlymdd gvdgfpafgf
       61 rpgsevkqpy rlylpeklpa eftlvatfkp tsfrtsylfa vlnpfetvvq lgirisdgpg
      121 snqnvsliyt nsdehshsee vakftvpklt kkwskivikv sindvtfyln chemarqrvt
      181 ripqelvfdt astlyiaqag phiqerydgl lqslklysgh ppdlvkctsd fdfsadeels
      241 sgdydlnlyd gsgdaefnki srdadedkse esnpppfitp pppnpdykgp kgekgdkgek
      301 gesvrgppgp pgppgrdedw lmkipqgppg qkgdtgsctc natalmssft mpkmiqgpkg
      361 epgvpgqegk qglmgltgaa gppgerglqg psgakgdkgd igipgpegpq gqkgepgrdg
      421 ipgekgaqgp pgppgkgefs gydpswkprn iyrpegitmr pglpgqkgep gtsgspgpkg
      481 esgipgskgi kgepghkgak gdhgkdgprg iqgfkgepga pgapglpgap gengrpaekg
      541 dkgdtgpegk pgppgppgps giggpgginv gdlgfgirgd kgdsgargyk gdkgtkgekg
      601 dkgdsgpagi pgingiqgpq gdkgepgkdg vsglpgipgt kgergergpp gattiansgd
      661 yitikgekga egkrgrrgrp gppgpvgppg kpgitgeigl pgwmgrpgtp gipgsigpmg
      721 pkgekgepga pspygvslgi kgdkgddgfp gipgqpgrdg qrgppgppgp pgapsqgkyi
      781 pvpgppgppg ppgppglsli gqkgepgigr shvfgerdyy gprqgarssl delkalrelk
      841 qlkelkeqlg vvtaatrgpl esttkivpga vtfqnteamt kmssvspvgt layiideqal
      901 lvrvnngwqy ialgsllpit tpappttspp panppfeasn linqipvkad gtgqwyprml
      961 rmaalnepft gdmhgirgad yacyrqarra glrgtfrafl ssrvqnvdsi vrlgdrdlpi
     1021 vnikgdvlfn swkemfngng ayfsqnpriy sfngkniltd fawpekvawh gshklgdram
     1081 dtycdawhss ssdryglgsp ltggrlleqv ryscdnkfal lcievtselg rrrrsagnrp
     1141 dddiemtend ymeyleelmq y
//