LOCUS XP_011857984 1728 aa linear PRI 30-MAR-2015
DEFINITION PREDICTED: collagen alpha-1(XVIII) chain [Mandrillus leucophaeus].
ACCESSION XP_011857984
VERSION XP_011857984.1
DBLINK BioProject: PRJNA279492
DBSOURCE REFSEQ: accession XM_012002594.1
KEYWORDS RefSeq.
SOURCE Mandrillus leucophaeus (drill)
ORGANISM Mandrillus leucophaeus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Cercopithecidae; Cercopithecinae; Mandrillus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_012107474.1) annotated using gene prediction method: Gnomon,
supported by mRNA and EST evidence.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Mandrillus leucophaeus Annotation
Release 100
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 6.2
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..1728
/organism="Mandrillus leucophaeus"
/isolate="KB7577"
/db_xref="taxon:9568"
/chromosome="Unknown"
/sex="female"
/tissue_type="heart"
Protein 1..1728
/product="collagen alpha-1(XVIII) chain"
/calculated_mol_wt=175311
Region 23..194
/region_name="DUF959"
/note="Domain of Unknown Function (DUF959); pfam06121"
/db_xref="CDD:399255"
Region <132..339
/region_name="PHA03247"
/note="large tegument protein UL36; Provisional"
/db_xref="CDD:223021"
Region 330..452
/region_name="CRD_Collagen_XVIII"
/note="Cysteine-rich domain of the variant 3 of collagen
XVIII (V3C18); cd07455"
/db_xref="CDD:143564"
Site order(343,345..347,349..351)
/site_type="other"
/note="putative Wnt binding site [polypeptide binding]"
/db_xref="CDD:143564"
Region 456..632
/region_name="LamG"
/note="Laminin G domain; Laminin G-like domains are
usually Ca++ mediated receptors that can have binding
sites for steroids, beta1 integrins, heparin, sulfatides,
fibulin-1, and alpha-dystroglycans. Proteins that contain
LamG domains serve a variety of...; cl22861"
/db_xref="CDD:473984"
Region <760..>1083
/region_name="gly_rich_SclB"
/note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
NF038329"
/db_xref="CDD:468478"
Region <1030..>1218
/region_name="gly_rich_SclB"
/note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
NF038329"
/db_xref="CDD:468478"
Region <1133..>1308
/region_name="gly_rich_SclB"
/note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
NF038329"
/db_xref="CDD:468478"
Region 1419..1467
/region_name="Collagen_trimer"
/note="Collagen trimerization domain; pfam20010"
/db_xref="CDD:466257"
Region 1552..1722
/region_name="Endostatin-like"
/note="Endostatin-like domain; the angiogenesis inhibitor
endostatin is a C-terminal fragment of collagen XV/XVIII,
a proteoglycan/collagen found in vessel walls and basement
membranes; this domain has a compact globular fold similar
to that of C-type lectins; cd00247"
/db_xref="CDD:238151"
Site order(1583,1592,1598,1607..1608,1611,1673..1674,1684)
/site_type="other"
/note="putative ligand binding site [chemical binding]"
/db_xref="CDD:238151"
CDS 1..1728
/gene="COL18A1"
/coded_by="XM_012002594.1:6..5192"
/db_xref="GeneID:105555574"
ORIGIN
1 mapdpsgcrv llllfcclaa aqadllnlnw lwfnnkdtsq aattipepqg llpvqptadt
61 tthvvpqdgs tepatapgsp eppselleds qvtptsaesp dtpeeniagv gakilnvaqg
121 irsfvqlwnd tvpteslara etrvveapvg tlalpgpsst prengtslwp srgapsspga
181 hmteagtlpa ptpsppslgr prapltgpsv pppssgrasl ssslggapaw gslqdpdsrg
241 lsptaaapsq qlqrpdvslr tpllhplvtg slgahaapsa fssglpgals qvavttligd
301 sgawvshaan saglglanns allgadpeap agrclplpps llvcgrlgil rswlpnhlhh
361 essqqvqaaa qvwggllrth chpflawffc lllappcgrv plpapppcrq fcealqdtcw
421 srlsggrlpv acaslptqed gycvfigpaa esvgeevgll qllgdpppqq itqtddpdvg
481 layvfgpean sgqvaryhfp slffrdfsll fhiqpategp gvlfaitdsa qavvslgvkl
541 sgvrdghqdi sllytepgag qthtaasfrl pafvsqwthl alsveggyva lyvdceefqr
601 mplarssrgl elepgaglfv aqaggadpdk fqasgdfgsg ladtrellre emgtalkprl
661 ptpppvtapp laggssteds rseeieeqtt vtslgaqtlp gsdsvstwdg svqtpggrvk
721 egglkgqkge pgipgppgra gppgspclpg ppglpcpvsp lgpvgpalqp vpgpqgppgl
781 pgrdgtpgrd gepgdpgedg kpgdtgpqgf pgtpgdvgpk gdkgdpgvga rgppgpqgpp
841 gppgpsfrhd kltfidmegs gfggdlealr gprgfpgppg ppgvpglpge pgrfgvnssd
901 vpgpaglpgv pgregppgfp glpgppgppg kegppgrtgq kgslgeagap ghkgskgdag
961 pagargesgl agapgpagpp gppgppgppg ppgrglpagf ddmegsggpf wstargadgp
1021 qgppglpglk gdpgvpglrg akgevganga pgfpglpgre gtagpqgpkg drgsqgekgd
1081 pgkdgvgqpg lpgppgppgp vvyvseqdga vlsvpgpegr pgfagfpgpa gpkgdlgskg
1141 ergspgpkge kgepgsvfsp dgsalgpaqk gakgepgfrg ppgpygrpgh kgeigfpgrp
1201 grpgmnglkg ekgepgdahl gfgmrgmpgp pgppgppgpp gtpvydsnvf aessrpgppg
1261 lpgnqgppgp kgtkgevgpp gppgqfpfdf lqleaemkge kgdrgdagqk gergepgggg
1321 ffgsslpgpp gppgppgypg ipgpkgesir gqpgppgpqg ppgigyegrq gppgppgppg
1381 ppgppsfpgp hrqtisvpgp pgppgppgpp gtmgtssgvr lwatrqamlg qvhevpegwl
1441 ifvaeqeely vrvrngfrkv qleprtplpr gtdnevaalq ppvvqlhdsn ayprrefphp
1501 tarpwraddi laspprlpep qpypgaphhs syvhlrpalp tsppahthrd fqpvlhlval
1561 nsplpggmrg irgadfqcfq qaravglvgt fraflssrlq dlysivrrad raavpivnlk
1621 dellfpswea lfagsegplk pgarifsfdg kdvlrhptwp qksvwhgsdp sgrrltesyc
1681 etwrtespsv tgqassllgg rllgqnaasc hhayivlcie nsfmtask
//
