LOCUS XP_012881022 1099 aa linear ROD 26-JUN-2015
DEFINITION PREDICTED: platelet-derived growth factor receptor beta [Dipodomys
ordii].
ACCESSION XP_012881022
VERSION XP_012881022.1
DBLINK BioProject: PRJNA287906
DBSOURCE REFSEQ: accession XM_013025568.1
KEYWORDS RefSeq.
SOURCE Dipodomys ordii (Ord's kangaroo rat)
ORGANISM Dipodomys ordii
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia;
Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_012267301.1) annotated using gene prediction method: Gnomon,
supported by mRNA evidence.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Dipodomys ordii Annotation Release
100
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 6.3
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..1099
/organism="Dipodomys ordii"
/isolate="6190"
/db_xref="taxon:10020"
/chromosome="Unknown"
/sex="female"
/tissue_type="kidney"
/collection_date="26-Jun-2006"
Protein 1..1099
/product="platelet-derived growth factor receptor beta"
/calculated_mol_wt=122778
Region 37..110
/region_name="ig"
/note="Immunoglobulin domain; pfam00047"
/db_xref="CDD:395002"
Region 48..52
/region_name="Ig strand B"
/note="Ig strand B [structural motif]"
/db_xref="CDD:409353"
Region 83..87
/region_name="Ig strand E"
/note="Ig strand E [structural motif]"
/db_xref="CDD:409353"
Region 97..102
/region_name="Ig strand F"
/note="Ig strand F [structural motif]"
/db_xref="CDD:409353"
Region 111..114
/region_name="Ig strand G"
/note="Ig strand G [structural motif]"
/db_xref="CDD:409353"
Region 212..310
/region_name="Ig"
/note="Immunoglobulin domain; cl11960"
/db_xref="CDD:472250"
Region 231..235
/region_name="Ig strand B"
/note="Ig strand B [structural motif]"
/db_xref="CDD:409353"
Region 244..248
/region_name="Ig strand C"
/note="Ig strand C [structural motif]"
/db_xref="CDD:409353"
Region 274..278
/region_name="Ig strand E"
/note="Ig strand E [structural motif]"
/db_xref="CDD:409353"
Region 288..293
/region_name="Ig strand F"
/note="Ig strand F [structural motif]"
/db_xref="CDD:409353"
Region 303..306
/region_name="Ig strand G"
/note="Ig strand G [structural motif]"
/db_xref="CDD:409353"
Region 314..414
/region_name="Ig"
/note="Immunoglobulin domain; cl11960"
/db_xref="CDD:472250"
Region 333..337
/region_name="Ig strand B"
/note="Ig strand B [structural motif]"
/db_xref="CDD:409353"
Region 346..350
/region_name="Ig strand C"
/note="Ig strand C [structural motif]"
/db_xref="CDD:409353"
Region 378..382
/region_name="Ig strand E"
/note="Ig strand E [structural motif]"
/db_xref="CDD:409353"
Region 392..397
/region_name="Ig strand F"
/note="Ig strand F [structural motif]"
/db_xref="CDD:409353"
Region 405..408
/region_name="Ig strand G"
/note="Ig strand G [structural motif]"
/db_xref="CDD:409353"
Region 561..949
/region_name="Protein Kinases, catalytic domain"
/note="The protein kinase superfamily is mainly composed
of the catalytic domains of serine/threonine-specific and
tyrosine-specific protein kinases. It also includes RIO
kinases, which are atypical serine protein kinases,
aminoglycoside phosphotransferases; cl21453"
/db_xref="CDD:473864"
Site order(605..608,611,613,631,633,664,680..683,822,826..827,
829,839..840)
/site_type="other"
/note="ATP binding site [chemical binding]"
/db_xref="CDD:270870"
CDS 1..1099
/gene="Pdgfrb"
/coded_by="XM_013025568.1:489..3788"
/db_xref="GeneID:105992616"
ORIGIN
1 mqlpgvmpar llkgqllllp illllgpqts qglvitppgp elvinasstf vlvcsgsapv
61 vwermakvpq qqlskmqnga fsstltltnv tgldtgeyfc tynssfgles gdrkrlyifv
121 pdpamvflpq nsddlfiflm evaettipcr vtdpqlevtl hekkvdtplp ipydhqrgfs
181 gifedktyic katvedreve sdayyiyslq vssinvsvsa vqtvvrqgen itilcivtgt
241 evvnfewtyp rlesgrkiep vtdflldmps hirsilhvls aelgdsgvys cnvsdtvteh
301 gdekavnitv levgyvrlqe vnpvevaelh qsrtlqvmfe aypppsvlwf kdnrtlgdss
361 ageiilstrn vsetwyvsel tlvrvkvaea gyytmlvfhe daeaqisfrl qvnvpvrmle
421 lseshpange qrvrcrgrgm pqpnvtwsic rdfkrcprel pptplgnsse gesqletnvt
481 ylveeqeyev vstlrlrhvd qplsvrctlq nllgqdmqev tvvphslpfk vvvisailal
541 vvltvislii limlwqkkpr yeirwkvies vssdgheyiy vdpiqlpyds twelprdqlv
601 lgrtlgsgaf gqvveatahg lshsqaimkv avkmlkstar ssekqalmse lkimshlgph
661 lnvvnllgac tkggpiyiit eycrygdlvd ylhrnkytfl qhhadkrhpp saelyssalp
721 talslpspvs lsgesdggym dmskdesvdy vpmlamkgdi kyadiessdy mtsydnyips
781 aperttline spvlsytdlv gfsyqvangm eflaskncvh rdlaarnvli cegklvkicd
841 fglardimrd snyiskgstf lplkwmapes ifnslyttls dvwsfgillw eiftlggtpy
901 pelpmneqfy naikrgyrma qpahasdeiy eimqkcweek feirppfsql vlllerllge
961 gykkkyqqvd eeflrsdhpa ilrsqtrfpg fhglrspldt ssvlytavqp negdndyiip
1021 lpdptpeaad egpmegspsl asstlneant sstiscdspl dlqeepepep qamepqpelp
1081 qppdsgcpel raevedsfl
//
