LOCUS XP_015246437 978 aa linear VRT 14-JAN-2016
DEFINITION PREDICTED: macrophage colony-stimulating factor 1 receptor 1-like
[Cyprinodon variegatus].
ACCESSION XP_015246437
VERSION XP_015246437.1
DBLINK BioProject: PRJNA308224
DBSOURCE REFSEQ: accession XM_015390951.1
KEYWORDS RefSeq.
SOURCE Cyprinodon variegatus (sheepshead minnow)
ORGANISM Cyprinodon variegatus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes;
Cyprinodontidae; Cyprinodon.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_015150972.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Cyprinodon variegatus Annotation
Release 100
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 6.5
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..978
/organism="Cyprinodon variegatus"
/isolate="N-32"
/db_xref="taxon:28743"
/chromosome="Unknown"
/sex="female"
/geo_loc_name="USA: Navarre, FL"
/collection_date="17-Sep-2010"
Protein 1..978
/product="macrophage colony-stimulating factor 1 receptor
1-like"
/calculated_mol_wt=110417
Region 36..113
/region_name="IG_like"
/note="Immunoglobulin like; smart00410"
/db_xref="CDD:214653"
Region 129..203
/region_name="IG_like"
/note="Immunoglobulin like; smart00410"
/db_xref="CDD:214653"
Region 216..310
/region_name="Ig"
/note="Immunoglobulin domain; cl11960"
/db_xref="CDD:472250"
Region 233..237
/region_name="Ig strand B"
/note="Ig strand B [structural motif]"
/db_xref="CDD:409530"
Region 247..251
/region_name="Ig strand C"
/note="Ig strand C [structural motif]"
/db_xref="CDD:409530"
Region 274..278
/region_name="Ig strand E"
/note="Ig strand E [structural motif]"
/db_xref="CDD:409530"
Region 290..295
/region_name="Ig strand F"
/note="Ig strand F [structural motif]"
/db_xref="CDD:409530"
Region 303..306
/region_name="Ig strand G"
/note="Ig strand G [structural motif]"
/db_xref="CDD:409530"
Region 332..416
/region_name="Ig"
/note="Immunoglobulin domain; cl11960"
/db_xref="CDD:472250"
Region 341..345
/region_name="Ig strand B"
/note="Ig strand B [structural motif]"
/db_xref="CDD:409446"
Region 355..358
/region_name="Ig strand C"
/note="Ig strand C [structural motif]"
/db_xref="CDD:409446"
Region 382..386
/region_name="Ig strand E"
/note="Ig strand E [structural motif]"
/db_xref="CDD:409446"
Region 396..401
/region_name="Ig strand F"
/note="Ig strand F [structural motif]"
/db_xref="CDD:409446"
Region 409..412
/region_name="Ig strand G"
/note="Ig strand G [structural motif]"
/db_xref="CDD:409446"
Region 414..502
/region_name="Ig"
/note="Immunoglobulin domain; cl11960"
/db_xref="CDD:472250"
Region 430..434
/region_name="Ig strand B"
/note="Ig strand B [structural motif]"
/db_xref="CDD:409562"
Region 443..447
/region_name="Ig strand C"
/note="Ig strand C [structural motif]"
/db_xref="CDD:409562"
Region 463..467
/region_name="Ig strand E"
/note="Ig strand E [structural motif]"
/db_xref="CDD:409562"
Region 483..488
/region_name="Ig strand F"
/note="Ig strand F [structural motif]"
/db_xref="CDD:409562"
Region 496..499
/region_name="Ig strand G"
/note="Ig strand G [structural motif]"
/db_xref="CDD:409562"
Region 553..923
/region_name="Protein Kinases, catalytic domain"
/note="The protein kinase superfamily is mainly composed
of the catalytic domains of serine/threonine-specific and
tyrosine-specific protein kinases. It also includes RIO
kinases, which are atypical serine protein kinases,
aminoglycoside phosphotransferases; cl21453"
/db_xref="CDD:473864"
Site order(598..601,604,606,624,626,657,673..676,786,790..791,
793,803..804)
/site_type="other"
/note="ATP binding site [chemical binding]"
/db_xref="CDD:133237"
CDS 1..978
/gene="LOC107095001"
/coded_by="XM_015390951.1:181..3117"
/db_xref="GeneID:107095001"
ORIGIN
1 mmesfltlll alvasaasve wrrpiikvns kvvtnpevvv rvgrpldlrc egngpvswqp
61 rlakhrrfms rssgnvrifr verpsaeftg tykcfytagp kssdlasslh vyvkdplrvf
121 wtsstslrvv rkegenfllp clltdpsatd lglrmdngtt vppgmnftvd rhrgilihnl
181 hpsfnadyvc takvngqert srafsinviq klrfppyvfl etdeyirivg eeikirctth
241 npnfnynvtw kyttksnpti eetvrsngen rldiqsilti pavdladtgn iscigtneag
301 vnstttyllv vdkpyirllp qlspklapkg lsvvvneged lelsllieay phitehrwlt
361 ptppnkssqe hkfirynnry hatlqlkrmn iqeqgqytfy arsnstnasi sfqvqmyqrp
421 navvrwenvt tltctsfgyp apriiwyqcv girptcnent sglqlaiplk aptvevqree
481 ygavevesvl tvgpssqrmt vecvafnlvg vsrdtlamev sdklftttls gaagilaill
541 lllvillyky kqkpryeirw kiieardgnn ytfidptqlp yneklefprd klklgkilga
601 gafgkvveat ayglgeednv mrvavkmlka cahsdekeal mselkilshl ghhknivnll
661 gactyggpvl viteycslgd llnflrqkae tfvnfvmsip disescndyk nicvqkkfir
721 sdsgissvas stylemrpcq lpnaeqsqdc eetgdwpldm ddllrfslqv aqgldflaar
781 ncihrdvaar nvlltnrrea kicdfglard imndsnyvvk gnarlpvkwm apesifdcvy
841 tvqsdvwsyg illweifslg qspypsmavd srfykmvkrg yqmsqpdfap lemyaimkmc
901 wnleptkrpt fskisqmiek llgghfeqgq viyqnlqqev teadaydqpk chdgpcdqsc
961 dhgeeeqplm ktnnyqfc
//
