LOCUS       XP_021534901            1301 aa            linear   MAM 03-NOV-2021
DEFINITION  collagen alpha-1(XVIII) chain isoform X3 [Neomonachus
            schauinslandi].
ACCESSION   XP_021534901
VERSION     XP_021534901.1
DBLINK      BioProject: PRJNA392091
DBSOURCE    REFSEQ: accession XM_021679226.2
KEYWORDS    RefSeq.
SOURCE      Neomonachus schauinslandi (Hawaiian monk seal)
  ORGANISM  Neomonachus schauinslandi
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia;
            Pinnipedia; Phocidae; Monachinae; Monachini; Neomonachus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_058403.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Neomonachus schauinslandi Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1301
                     /organism="Neomonachus schauinslandi"
                     /db_xref="taxon:29088"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="blood"
                     /geo_loc_name="USA: Kuai'i, HI"
                     /collection_date="2015-01-12"
                     /collected_by="NOAA"
     Protein         1..1301
                     /product="collagen alpha-1(XVIII) chain isoform X3"
                     /calculated_mol_wt=132340
     Region          41..229
                     /region_name="LamG"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; cl22861"
                     /db_xref="CDD:473984"
     Region          <479..>660
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <592..>793
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          994..1042
                     /region_name="Collagen_trimer"
                     /note="Collagen trimerization domain; pfam20010"
                     /db_xref="CDD:466257"
     Region          1127..1295
                     /region_name="Endostatin"
                     /note="Collagenase NC10 and Endostatin; pfam06482"
                     /db_xref="CDD:461931"
     Site            order(1155,1164,1170,1179..1180,1183,1245..1246,1256)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:238151"
     CDS             1..1301
                     /gene="COL18A1"
                     /coded_by="XM_021679226.2:79..3984"
                     /db_xref="GeneID:110571100"
ORIGIN      
        1 maprwpwlrp rprslldvla plvlllgvra asaepeslgt evgllqllge ppppqvtqvd
       61 dpdigpafvf gpdansgqva ryhfpspffr dfslhfhvrp atedagvlfa itdaaqavvs
      121 vgvrlsgvrd ghqhiqllyt epgatrthta asfrlpaftg qwtrfalsvd gatvalfvdc
      181 elfqrvplvr slrglelepg aglfvaqagg adpdkfqgmi aelrvrgdph vsplhcleed
      241 dedsggvsgd fgsgleetre plreqsgpsp kpslpeappv tspplaagrd vedsrteeie
      301 eettvsslga rtlpgldavt iesvrspggg leegpavqsp narpipgpqg ppgppgppgk
      361 dgapgrdgep gdpgedgrpg dpgpqgfpgt pgdagpkgek gdpgvgprgp pgpqgppgpp
      421 gpsfrhdklt fidmegsgfg gdleslrgpr gfpgppgppg vpglpgepgr fgmnssdvpg
      481 paglpgvpgr dgppglpgtp gppgppgkdg gpgkmgqkgs pgevgapgpk grqgdsgpvg
      541 apgenglaga pgpagppgpp gppgppgppg pglaagfddm egsgrpfwst aqgasgsqgp
      601 pgppgvkgdp gitgppgakg evgadgppgf pglpgregsa gaqgpkgekg tqgekgdpgr
      661 dgvgqpglpg ppgppgpvvy mseqdrvlgg vpgpegrpgf agfpgpagpk gdlgskgqrg
      721 lpgpkgekge pgpvfspdgs llapaqkgak gepgfrgppg pygrpghkge igfpgrpgrp
      781 gmnglkgekg epghssvgfg lrgppgppgp pgppgppgtp iydsnafmes grpgppglpg
      841 lqgpsgpkgd kgdvgppgpp gqfpfdllql gtemkgekgd rgdtgqkger gepggggffg
      901 ssvpgppgpp gypgipgpkg esirgqpgpp gpqgppgigh egrqgppgpp gppgppgpps
      961 fpgpyrqtis vpgppgppgp pgppgtmgts sgqvriwaty qtmldkvpev pegwlifvae
     1021 reelyvrvrn glrkvllear tplphgtdne vaalqppvgn pyprrelths tarpwraddi
     1081 lanpprlldp qpypgapqhg sylhfqparp tgrpththth qdyhpvlhlv alnspqpggm
     1141 rgirgadfqc fqqaravgla gtfraflssr lqdlysvvrr adrtsvpivn lrdevlfpsw
     1201 ealfsgsegq lkpgarifsf dgrdvlqhpa wpqksvwhgs dpsgrrltds ycetwrteaa
     1261 aatgqassll agrllaqkaa schsafivlc iensfmtsfs k
//