LOCUS       XP_023379523            1250 aa            linear   MAM 19-JAN-2018
DEFINITION  collagen alpha-1(XVIII) chain [Pteropus vampyrus].
ACCESSION   XP_023379523
VERSION     XP_023379523.1
DBLINK      BioProject: PRJNA275879
DBSOURCE    REFSEQ: accession XM_023523755.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Pteropus vampyrus (large flying fox)
  ORGANISM  Pteropus vampyrus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera;
            Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_011889187.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Pteropus vampyrus Annotation Release
                                           101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 4% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1250
                     /organism="Pteropus vampyrus"
                     /isolate="Shadow"
                     /isolation_source="Lubee Bat Conservancy"
                     /db_xref="taxon:132908"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="Kidney"
     Protein         1..1250
                     /product="collagen alpha-1(XVIII) chain"
                     /calculated_mol_wt=125707
     Region          166..342
                     /region_name="LamG"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; cl22861"
                     /db_xref="CDD:473984"
     Region          <492..>718
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <685..>957
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <865..>1062
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          1158..1206
                     /region_name="Collagen_trimer"
                     /note="Collagen trimerization domain; pfam20010"
                     /db_xref="CDD:466257"
     CDS             1..1250
                     /gene="COL18A1"
                     /coded_by="XM_023523755.1:16..3768"
                     /db_xref="GeneID:105305970"
ORIGIN      
        1 mtpllcvpas vpflcprpqr malrlaqhra rcravglvsg aalpqetggg gprvctargp
       61 vcagpsagsq hsrcrdpvtp wsafpgrtrv vlvgsrrlwq dclcvwtsad etpavaggrr
      121 aldadpgpqs grgrgrglal tllrtqlpyl ltdlrsarvt ksvgaevgll qllgepppqh
      181 vtqvddpdvg payvfgpdas sgqaarahlp spffrdfsll fyvrpatega gvlfaitdaa
      241 qavvsvgvkl ssvrdghqhv qllytepgta qtrtaasfrl paftgqwtrl alsvdgdtva
      301 lfvdceelqr vplarspqrl qlepgaglfv aqagaadpds fqerklvvpv fsarcwyrra
      361 rmgpahqrrs atsggvlgss pevdlapraa aaggaspppa graprhcspl vsvtpqasgd
      421 fgsglqespe lageevgmss qpglpeappa tspplaggsn sedsrteeie eettasslga
      481 qtlpgshtva tgdgniwspg dsleedpagp vvrgpdarlv pgpqgppgpp gkdgapgrdg
      541 epgdpgkdgr pgdtgpqgfp gtpgdvgpkg ekgdpgvgpr gppgpqgppg ppgpsfrqdk
      601 ltfidmegsg fggdleslrg prgfpgppgp pgvpglpgqp grfgvnssat pgpaglpgvp
      661 grdghpglpg ppgppgspgr dgrpgetgqk gslgaegapg pkgskgdpgp igapgvnglt
      721 gapgpagppg ppgppgppgp glaagfddme gsggpfwpta rgadglqgpp gqpgakgdpr
      781 rrppgaasll argrlsqkte grgarsrpps gfrrwpvgla vgtrrggtav vtwpfflsaa
      841 pralplprwe kmvagahgak gqpgfagfpg pagpkgnlgs rgqqgppgvk gekgepgmvy
      901 gpdgrglapa hkgakgepgp rgppgpygrp ghkgeigfpg rpgrpgmngf kgekgepgda
      961 svgfgvqgpp gppgppgppg lpgtpvydsn afmesgppgp pgppghqgps gpkgdkgevg
     1021 spgapgqfpl dlfqlgsemk gekgdrghtg qkgergepga ggffgssipg ppgppgypgi
     1081 pgpkgestpg qpgppgprgp pgvgyegrqg ppgppgppgp pgppsfpgpy rqtisvpgpp
     1141 gppgppgppg tmgtasgvri wptyqtmldr vpelpegwlv fvaegeelyv rvrdgfrkvl
     1201 lgartplprg tvsphlptpa gfgthvpafq magahvvcds grlhclmvle
//