LOCUS XP_026547601 1463 aa linear VRT 06-OCT-2018
DEFINITION nuclear receptor coactivator 2 isoform X5 [Notechis scutatus].
ACCESSION XP_026547601
VERSION XP_026547601.1
DBLINK BioProject: PRJNA494227
DBSOURCE REFSEQ: accession XM_026691816.1
KEYWORDS RefSeq.
SOURCE Notechis scutatus (mainland tiger snake)
ORGANISM Notechis scutatus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata;
Toxicofera; Serpentes; Colubroidea; Elapidae; Hydrophiinae;
Notechis.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_020716616.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Notechis scutatus Annotation Release
100
Annotation Version :: 100
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.1
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..1463
/organism="Notechis scutatus"
/db_xref="taxon:8663"
/chromosome="Unknown"
Protein 1..1463
/product="nuclear receptor coactivator 2 isoform X5"
/calculated_mol_wt=159769
Region 28..91
/region_name="bHLH-PAS_NCoA2_SRC2"
/note="basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS)
domain found in nuclear receptor coactivator 2 (NCoA-2)
and similar proteins; cd18950"
/db_xref="CDD:381520"
Site order(30..32,36,38..39,43,68..69)
/site_type="other"
/note="putative DNA binding site [nucleotide binding]"
/db_xref="CDD:381520"
Site order(41..42,45..46,48..49,70,73,77,79..80,84,86)
/site_type="other"
/note="putative dimer interface [polypeptide binding]"
/db_xref="CDD:381520"
Region 123..212
/region_name="PAS"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; cd00130"
/db_xref="CDD:238075"
Site order(139,143,149,162..165,194)
/site_type="active"
/note="putative active site [active]"
/db_xref="CDD:238075"
Site order(159,163,171,174..175,201,203)
/site_type="other"
/note="heme pocket [chemical binding]"
/db_xref="CDD:238075"
Region 267..376
/region_name="PAS_11"
/note="PAS domain; pfam14598"
/db_xref="CDD:464214"
Region 461..585
/region_name="NCOA_u2"
/note="Unstructured region on nuclear receptor coactivator
protein; pfam16665"
/db_xref="CDD:465223"
Region 632..705
/region_name="SRC-1"
/note="Steroid receptor coactivator; pfam08832"
/db_xref="CDD:462615"
Region 727..813
/region_name="DUF4927"
/note="Domain of unknown function (DUF4927); pfam16279"
/db_xref="CDD:465083"
Region 902..>1425
/region_name="Med15"
/note="ARC105 or Med15 subunit of Mediator complex
non-fungal; pfam09606"
/db_xref="CDD:312941"
Region 1068..1113
/region_name="Nuc_rec_co-act"
/note="Nuclear receptor coactivator; pfam08815"
/db_xref="CDD:462608"
Region 1280..1337
/region_name="DUF1518"
/note="Nuclear receptor coactivator, DUF1518; pfam07469"
/db_xref="CDD:462174"
CDS 1..1463
/gene="NCOA2"
/coded_by="XM_026691816.1:419..4810"
/db_xref="GeneID:113429264"
ORIGIN
1 msgigenssd psraeqrkrk ecpdqlgpsp krstekrnre qenkyieela elifanfndi
61 dnfnfkpdkc ailketvkqi rqikeqekaa aanedevqka dvsstgqsvi dkdalgpmml
121 ealdgfffvv nvegnvvfvs envtqylryn qeelmntrvy nilhvgdhne fiknlpksmv
181 nggpcygesp rrnshtfncr mlvkpltdse eeghenqeah lkyetmqcfa vsqpksiked
241 gedlqsclic varrvpmker pflpfsetfs trhdlqgkit sldtstmraa mkpgwedvvr
301 rciqrfyaqh egdisfakrh hqevlrqgla lspvyrfsls dgtivgaqtk sklvrsqtts
361 epqhvislhm lhreqnvcgm nqdltgqvlg kplntissns pahqamcsgn pgqdmtinsn
421 mnfaingpke qmgmptsrfs ssggmnhvss iqtsapqgsn yalkmnspsq nspgmtpgqp
481 nsmlsprhrm spgvagspri ppnqfspags lhspvgvcss tgnshsytns slnalqalse
541 ghgvslgssl aspdvkmgnl qnspvsmnpp qlakmgnlds kdsfglhgeq seettgqten
601 vchsgeqken ndnmpqvgse rpdgqnrlhd gksqtkllql lttksdqmep sslantmgda
661 nkdsmgslsg sgaahgtslk ekhkilhrll qdsnspidla kltaeatgke lnqetsstap
721 gseitckqep vspkkkenal lrylldkddt keiglpditp klerldsktd pssstvkpia
781 mktekeemrf epneqpgsel dnleeilddl qnsqlsqlfp dtrpvasags vdkqaiindl
841 mqitgdnspg tpvgsqkptg risqstftna rqaqlgrmlp nqnlqldial qnppgaatfp
901 pirnnspysv ipqpsmlgsq gmmgsqgnlg nnnpgmiagn tprpamssgd wgsqaaavrv
961 tcaattsamn rpiqggmirn ptsslpmrpn sqavprqilq sqvmnmggse lemnmgapqy
1021 tqqqappnqt apwpdsilpi dqasfsnqnr qpfvgspddl mcqrpasesp sdegalldql
1081 ymalrnfdgl eeidralgip elvsqqtqgv dpesfsnqep niileqkasv ftqqyasqaq
1141 maqgnytplq dpnfhpmaqr pgyaalrmqp rpglrptglv qnppnqlrlq lqhrlqaqqn
1201 rqplinqign vssmnlslrp gvptqvreqg ninsqmlaqr qreilsqhlr hrqmhqvqqr
1261 tlmmrgqsmn mtpsmvasgg ipatmsnpri pqtnpqqfpf ppnyginqqp dsgftgattp
1321 qsplmsprma htqnpliqqs qanpayqsst eingwgqgni ggnsmfsqqs pphfgqqant
1381 smynnnmnin vsmvansagl nnmnqmtgqi nmtsatsvpt sglpsmgpeq vndpamrggs
1441 lfpnqlpgmd mikqegdasr kyc
//
