LOCUS       XP_031666160            1329 aa            linear   VRT 08-JUL-2025
DEFINITION  collagen alpha-1(XVIII) chain isoform X7 [Oncorhynchus kisutch].
ACCESSION   XP_031666160
VERSION     XP_031666160.1
DBLINK      BioProject: PRJNA378663
DBSOURCE    REFSEQ: accession XM_031810300.1
KEYWORDS    RefSeq.
SOURCE      Oncorhynchus kisutch (coho salmon)
  ORGANISM  Oncorhynchus kisutch
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_034203.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_002021735.2-RS_2025_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.4
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/03/2025
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1329
                     /organism="Oncorhynchus kisutch"
                     /isolate="150728-3"
                     /db_xref="taxon:8019"
                     /sex="female"
                     /tissue_type="muscle"
                     /dev_stage="juvenile"
                     /geo_loc_name="Canada: Vancouver"
                     /linkage_group="LG30"
                     /note="double haploid"
     Protein         1..1329
                     /product="collagen alpha-1(XVIII) chain isoform X7"
                     /calculated_mol_wt=137346
     Region          110..300
                     /region_name="LamG"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; cl22861"
                     /db_xref="CDD:473984"
     Region          <381..>737
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <580..>882
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <797..>1003
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          1053..1100
                     /region_name="Collagen_trimer"
                     /note="Collagen trimerization domain; pfam20010"
                     /db_xref="CDD:466257"
     Region          1154..1322
                     /region_name="Endostatin"
                     /note="Collagenase NC10 and Endostatin; pfam06482"
                     /db_xref="CDD:461931"
     Site            order(1182,1191,1197,1206..1207,1210,1272..1273,1283)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:238151"
     CDS             1..1329
                     /gene="LOC109874915"
                     /coded_by="XM_031810300.1:379..4368"
                     /db_xref="GeneID:109874915"
ORIGIN      
        1 mallclysll llmapvhgqw wsaflgksqe mttqplttvp tttqvlwtte gtevgqvgtq
       61 tevfttapvq stplqsiqep agdgtteikp kakkislkmw ksrergstgh ldlteligvp
      121 lppsvsfitg yegfpaygfg pdanigrltk tfmpdpffrd faiivtirps skqggvlfai
      181 tdaqqkvvql glaltpvede tqriqlyyte ggeesshsqq vasfklpdmr nkwtrftlsv
      241 qdqevrlymd cddfqaetfh rssrqlsfep ssgifvgnag gtglekfvgs iqqlvikpdp
      301 raaeeqceed dpyasgdgsg ddtlhdretd dklmnterkk etarpedmls vpvrapptes
      361 peleldeytv hltptnqahq emllevshqt eepgersgdg rplsygqkge qgepgpmgpa
      421 gprgppgpst psedrsghgq pgprgpqgps gapgvpgkdg qpgrkgedgd pgqrgphgfp
      481 glagevgvkg dkgdtgvglp gppgppgplk shsvpygeda lgsgfgdldd tefirgspgp
      541 pgppgqpgpp gptrffease glfpgqpgsp gppgrdglvg khgppgptgl dgdagvtgpt
      601 glkgeqglag pngpmgvsgd pgltgatgpr glegktgdpg prglpgppgp pggrffvedv
      661 egsgkndmvl gtelkgpqgp pglpgpagpk gedgkdgasg lsvkgepgas gpeglqglag
      721 lpgarglkgd kgdpgpkgec gpdghnvpgp pgppgppgpi inlqdlllnn tesmfnitei
      781 rgppgpmgpr gpkgdsglpg fqgppgmkga kgeagvtiaa dgtvmtsvrg prgpkgikge
      841 rgfpgaygvm gpigptgqkg eygfpgrpgr pgmagkkgdq gdaigqpglp gppgppgppg
      901 pvtglngvng skgssqggrr nggakgekge vglpgmpgep ddilpegvvg ekgdmgyegm
      961 kgdqgepglp gppglpgrsg lvgpkgesvi gtvghpgapg epgvlgigrp gsrgppgpag
     1021 ppgpppvygs avsipgppgp pgppgitgye npvstyrntn slmreshraa egsmayvsdk
     1081 gelyvrtrdg wrkvqlgeli lvpaespssa vsqalsrpgd rtrphrphsq elvgtsyvpn
     1141 ynvlphtvhs vpalhlvaln apfsgdmrgi rgadfqcyqq aramgltaty raflsshlqd
     1201 lativkkgdr ynmpvinlkg eviysswmni fsgnggvfdp sipiysfegr nvmtdptwpq
     1261 klvwhgsstv girmttnyce awragdmavt gqasllqtgr llgqhtrscs nhfivlcien
     1321 syidhrrsn
//