LOCUS       XP_033345379            1160 aa            linear   INV 16-APR-2020
DEFINITION  collagen alpha-1(IX) chain isoform X6 [Bombus vosnesenskii].
ACCESSION   XP_033345379
VERSION     XP_033345379.1
DBLINK      BioProject: PRJNA623919
DBSOURCE    REFSEQ: accession XM_033489488.1
KEYWORDS    RefSeq.
SOURCE      Bombus vosnesenskii
  ORGANISM  Bombus vosnesenskii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Altocrustacea;
            Allotriocarida; Hexapoda; Insecta; Pterygota; Neoptera; Eumetabola;
            Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea;
            Anthophila; Apidae; Bombus; Pyrobombus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_022882930.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Bombus vosnesenskii Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1160
                     /organism="Bombus vosnesenskii"
                     /isolate="JDL3184/JDL3185"
                     /isolation_source="2 male haploid bees from laboratory
                     colony"
                     /db_xref="taxon:207650"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /geo_loc_name="USA: Oregon, Jackson County, Emigrant Lake"
                     /lat_lon="42.15236 N 122.62105 W"
                     /collection_date="26-Mar-2015"
                     /collected_by="Jonathan Koch"
                     /identified_by="James Strange"
     Protein         1..1160
                     /product="collagen alpha-1(IX) chain isoform X6"
                     /calculated_mol_wt=121789
     Region          30..220
                     /region_name="LamG"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; cl22861"
                     /db_xref="CDD:473984"
     Region          <369..>648
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <576..>765
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          871..918
                     /region_name="Collagen_trimer"
                     /note="Collagen trimerization domain; pfam20010"
                     /db_xref="CDD:466257"
     Region          958..1126
                     /region_name="Endostatin-like"
                     /note="Endostatin-like domain; the angiogenesis inhibitor
                     endostatin is a C-terminal fragment of collagen XV/XVIII,
                     a proteoglycan/collagen found in vessel walls and basement
                     membranes; this domain has a compact globular fold similar
                     to that of C-type lectins; cd00247"
                     /db_xref="CDD:238151"
     Site            order(988,997,1003,1012..1013,1016,1077..1078,1088)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:238151"
     CDS             1..1160
                     /gene="LOC117231243"
                     /coded_by="XM_033489488.1:728..4210"
                     /db_xref="GeneID:117231243"
ORIGIN      
        1 mrprlqwlif vlfcvtrvna dffnekkele ydllqasval tddnnlyidd gldgfpsfgf
       61 rpgsevkqpy rlylpeklpa eftlvatfkp tsfrtsylfa vlnpfetvvq lgirisdgpg
      121 tnqnvslvyt nsdlhshsee vakftvpklt kkwskivirv sttdvtlyln chemakqrvt
      181 riplelmfdt astlyiaqag phiqekydgl lqslklysgh padlvrctad fnfnpdedlg
      241 sgdinndlid gledvdtnvp digrdddedr seesnpppfi tppppnpdyk gpkgekgdkg
      301 dkgesvrgpp gppgppgqde gppgkkgepg tctcnatalm asftmpkmiq gpkgeqgvpg
      361 qegkqgqmgl tgaagppger glegpqgpkg dkgdvgiagp egpqgqkgep grdgipgekg
      421 aqgppgppgk gefsgydpsw kprgiyrteg itmrpglpgq kgeaglpgsp gpkgetgiag
      481 akgykgepgh kgakgdhgke gprgiqgfkg epgapgapgl pgapgengrp aekgdkgdtg
      541 pegkpgpagv pgppglpgls gsggvnvgea mlrekgdkge sgargykgdk gtkgekgdkg
      601 dsgpagipgv ngiqgpqgnk gepgkdgvpg apgvigakge kgergppgat aiassgdyit
      661 ikgekgaegk rgrrgrpgpp gpvgppgktg amgeiglpgw ansmkgrpgt pglpgpvgpv
      721 gpkgekgepg tpspygvsvg ikgdkgddgf pgipgqpgrd gqrgppgppg ppgppsqgny
      781 ipvpgppgpp gppgppglsl igqkgepgig rshifgerdy ygvrqgprts ldelkalrel
      841 kqlkelkehl gaattatrgp lesttkivpg avtfqnteam tkmsavspvg tlayiideqa
      901 llvrvnngwq yialgsllpi ttpappttsp ppvnppfeas nlinqipvka dgtgwyprml
      961 rmaalnepft gdmhgvrgad yacyrqakra glrgtfrafl ssrvqnvdsi vrlgdrdlpi
     1021 vnikgdvlfn swkemfngng ayfsqnpriy sfngkniltd fawpekvawh gshklgdram
     1081 dtycdawhss ssdryglgsp ltggrlleqv ryscdnkfal lcievtsett rrrrsvevse
     1141 dedemsendy keyldslmen
//