LOCUS       XP_038048925            1685 aa            linear   INV 15-DEC-2020
DEFINITION  collagen alpha-1(I) chain-like isoform X3 [Patiria miniata].
ACCESSION   XP_038048925
VERSION     XP_038048925.1
DBLINK      BioProject: PRJNA683060
DBSOURCE    REFSEQ: accession XM_038192997.1
KEYWORDS    RefSeq.
SOURCE      Patiria miniata (bat star)
  ORGANISM  Patiria miniata
            Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Asterozoa;
            Asteroidea; Valvatacea; Valvatida; Asterinidae; Patiria.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_024037054.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Patiria miniata Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1685
                     /organism="Patiria miniata"
                     /isolate="m_02_andy"
                     /isolation_source="dissected testis tissue"
                     /db_xref="taxon:46514"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="sperm"
                     /geo_loc_name="USA: California"
                     /collection_date="2019-09"
     Protein         1..1685
                     /product="collagen alpha-1(I) chain-like isoform X3"
                     /calculated_mol_wt=170286
     Region          1..>133
                     /region_name="LamG"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; cl22861"
                     /db_xref="CDD:473984"
     Region          <251..575
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          <545..>784
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          893..>1146
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <1090..>1315
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          1512..1682
                     /region_name="Endostatin-like"
                     /note="Endostatin-like domain; the angiogenesis inhibitor
                     endostatin is a C-terminal fragment of collagen XV/XVIII,
                     a proteoglycan/collagen found in vessel walls and basement
                     membranes; this domain has a compact globular fold similar
                     to that of C-type lectins; cl23985"
                     /db_xref="CDD:474121"
     Site            order(1544,1553,1559,1568..1569,1571,1633..1634,1644)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:238151"
     CDS             1..1685
                     /gene="LOC119722725"
                     /coded_by="XM_038192997.1:73..5130"
                     /db_xref="GeneID:119722725"
ORIGIN      
        1 mrrgdpafhl drdtnigrla dyifpldfte rfsdftllvt fkpesedvgp llvvtdnlqt
       61 tvilalnvtr aeegrhrvtl lmtdvsagtp skasfvvpsl tghwsqfsls vindmatlff
      121 ncstytstsl mrpegwklai pqqaavfvgs qgfaldntat fagtiqtlem sndpdeaelg
      181 cddgdqelrk qrlykretss snladalitn kdiptlptns kqngivfgsa egsglkatee
      241 temfsgmfds tsapssetvk ptmtstgegi npnsvspdfi hgmgstteap temrtasvsp
      301 sgitkaasds psemgrttkt paemrtpsss psgmetaska sleassktpd dmgvsskvts
      361 gmetaskssp vaattsetlv ekpatkkpvt lprpepesnt spitpsvtds vasasptmqp
      421 atlptmapte spttqspsrg pmvtvqdvls pgmvsdgqdr mtvtpttplv rvmsetpvpt
      481 ekdmstpagk atpapdkatp apdkatpapv dkvattvtia tvapvtlatp tpivkvisgs
      541 pgvpgvagep gpkgdpgvdg ndglpgedgg qgpagvagdk gekgmkgeag kagpkgdlgd
      601 pglsgptgpe glpgaagppg dkgvqgdtgp igpggtkgvk gepgiglpgp sglfvtpdpe
      661 tirgpkgdqg ekgeagpkgd kgdqgdigpv gpegesgpqg dkgekgeagv glpgpqgsvg
      721 pqgpegpqge tgplaelpef fdlfegsgfe dfrgqlgqkg kdgqpgpvgp egpmgltgpq
      781 gpqgiqgapg ppgmpgvpgt pgrpgtvamn ytgpdgpcsc rdglngsqgp pgiqgpagpp
      841 gtpgrngtag tpgengkpgv pgiegpagmq gdpgmagpqg ppgppgkvyi mpsemtptai
      901 skmltdgdal tgsgfmpltk spidgggeli tgepgppgpq gppgpagerg drgeigllge
      961 rgpkgdvgpa gpkgmqgiqg dtgppgpsgk hgkdgregpq gkqgepgigv rgpkgdvgpe
     1021 gpagtpgkng smgslglqgp pgppgppgem midmdghmae rgekgdrgev gppgptgqkg
     1081 dgglngipgf hgdkgdager gpagidgidg lkgemglkgd tgsegtpgrd glnglpgprg
     1141 pqgpkgdpyv pddttmllyk gmrgprgprg pkghfgipgr pgshgdsgpp glqgppging
     1201 rpgiglqggk geqgmkgekg epaiygtdgt dtpialgikg ekgdsgergl sgkrgpagpq
     1261 gvpgfpgvng lhgpkglmgd kgeegrpgam ghpgvdgvpg gegpqglkge kgdpgigvqg
     1321 dqgrsgspgp pgfgvpgidg pegprgppgp pgppgaqsfp espdgsyipi egppgpqgfp
     1381 gldgqqgrpg qtgpqgpqgl qgergprgyp gtgsagqlts frsindmihq gasllpgtia
     1441 fvadvqelyv rkdngmtqil lgatfnldpv qpplptttst psqqthstte kvvtvpttkp
     1501 nlpgpeiplg dqpmlymyal nkpmtgdrre glpgadhhcy qqaqqaglhg tyraflsskv
     1561 qdvrsvvnrd yhhlpvanak geimfeswsg ifngseasfd sdkhiysfng kdvmtseewd
     1621 qkyvwhgsyv dgsrmmdsyc eewrtqdyda ngqaspltsh kllgqetqlc snalvvlcvq
     1681 vspdt
//