LOCUS       XP_042164850            1226 aa            linear   VRT 08-JUL-2021
DEFINITION  collagen alpha-1(XVIII) chain isoform X1 [Oncorhynchus
            tshawytscha].
ACCESSION   XP_042164850
VERSION     XP_042164850.1
DBLINK      BioProject: PRJNA432585
DBSOURCE    REFSEQ: accession XM_042308916.1
KEYWORDS    RefSeq.
SOURCE      Oncorhynchus tshawytscha (Chinook salmon)
  ORGANISM  Oncorhynchus tshawytscha
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_056457.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oncorhynchus tshawytscha Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1226
                     /organism="Oncorhynchus tshawytscha"
                     /isolate="Ot180627B"
                     /db_xref="taxon:74940"
                     /sex="male"
                     /tissue_type="blood"
                     /dev_stage="Mature"
                     /geo_loc_name="Canada: British Columbia, Capilano River"
                     /linkage_group="LG29"
     Protein         1..1226
                     /product="collagen alpha-1(XVIII) chain isoform X1"
                     /calculated_mol_wt=124465
     Region          37..225
                     /region_name="LamG"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; cl22861"
                     /db_xref="CDD:473984"
     Region          <358..>655
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <680..>936
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          985..1033
                     /region_name="Collagen_trimer"
                     /note="Collagen trimerization domain; pfam20010"
                     /db_xref="CDD:466257"
     Region          1053..1221
                     /region_name="Endostatin-like"
                     /note="Endostatin-like domain; the angiogenesis inhibitor
                     endostatin is a C-terminal fragment of collagen XV/XVIII,
                     a proteoglycan/collagen found in vessel walls and basement
                     membranes; this domain has a compact globular fold similar
                     to that of C-type lectins; cl23985"
                     /db_xref="CDD:474121"
     Site            order(1082,1091,1097,1108..1109,1112,1174..1175,1185)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:238151"
     CDS             1..1226
                     /gene="LOC112227571"
                     /coded_by="XM_042308916.1:403..4083"
                     /db_xref="GeneID:112227571"
ORIGIN      
        1 mtsrslslws fgihlalcyc qlstayqlld ergsqgqidl teligiplpp svsfitgfeg
       61 ypaysfgpda nvgrltksfi pdpfyrdfam tvtakpttqr ggvlfaitda yqrvvhlgva
      121 lspvedgsqr vllyytdpgd gstkeaasfk lgdltgrwar ftltvqgaev rlymdceeyh
      181 rvafqrspep ltfeassgif vgnaggtgld rfvgsiqqlv lkgdptapdd qceeddpyas
      241 gygsgddsfd dtetldevkk vveereyimp eepmitpvra ppteaspsdd eedagetsgq
      301 eveltaergp sqtadaayrl gsampsqkge rgdpgpagpp gspgppgpqs plgdgssgeg
      361 epgprgpqgp qgpagtpgap gndgqpgsgg kdgdpgengv qgfpglpgdp gpkgdkgdpg
      421 vgkpgspgpp gppgrpnssr slnvvdgsgf edfdsdteim tgppgppgsp glpgppgsse
      481 glsaspgapg tpgkdgemgk pgqpgvdghd gdpgpagerg ekgepglsgp pgpkgepsaa
      541 gfpglpgseg pegtpglrgp pgppgppgrg fsldledieg sgtlggfgav mprgpqgpig
      601 kpgppgpkgk dgqdglpgva vkgepgapga agssgldglp ghtgvkgdsg vmgpkgergq
      661 dglsfpgppg ppgppgpvin lqdlllndte gvfnfsggle sqgprgprgp kgdlgmtgfm
      721 gppglkgekg epgvmvaadg smmsgltgpq gpkgikgdcg vpgpagvmgp igpegpkgey
      781 gypghpgrpg isghkgdrgd avvvsgppgp pgppgrpgmf ncpkgtvfpi pprphckkai
      841 ngsksstngg anclptgtkg drgergfpgm papsltmlpk gttgnkgdhg frgdkgekge
      901 aglpgspgmp grsglvgpkg etvmgprgyp gvpgspgtpg ygrpgpqgpq gppgppgeps
      961 rfgsavtihg ppgptgpagp pgtsamtfps sevmmqqtky ssegtlsftt gtgklyirvq
     1021 qgwkevllgd liplpmnlll ndeaqpgsgr kyglklvaln qphtgnfggv yiadkmcyeq
     1081 akamglsayy raflsspkpr ainkdlvpqk fresypvtnl rgdilfsnyk siftggggkf
     1141 ppnipiysfd grdvladpfw pkksiwhgsn tfgnmavdrs ceswrvndis ivgqssslss
     1201 gsligqqtss csneliilci etiehv
//