LOCUS       XP_058685039             436 aa            linear   VRT 14-AUG-2023
DEFINITION  suppressor of cytokine signaling 4 [Poecile atricapillus].
ACCESSION   XP_058685039
VERSION     XP_058685039.1
DBLINK      BioProject: PRJNA1004590
DBSOURCE    REFSEQ: accession XM_058829056.1
KEYWORDS    RefSeq.
SOURCE      Poecile atricapillus (Black-capped chickadee)
  ORGANISM  Poecile atricapillus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Paridae; Poecile.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_081249) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030490865.1-RS_2023_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/11/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Poecile atricapillus"
                     /isolate="bPoeAtr1"
                     /db_xref="taxon:48891"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="USA: Rockefeller University Field Research
                     Center, Millbrook, New York"
                     /lat_lon="41.767983 N 73.750862 W"
                     /collection_date="2018-05-18"
                     /collected_by="Jean-Nicolas Audet"
     Protein         1..436
                     /product="suppressor of cytokine signaling 4"
                     /calculated_mol_wt=49705
     Region          62..111
                     /region_name="SOCS"
                     /note="Suppressor of cytokine signalling; pfam12610"
                     /db_xref="CDD:432667"
     Region          271..371
                     /region_name="SH2_SOCS4"
                     /note="Src homology 2 (SH2) domain found in suppressor of
                     cytokine signaling (SOCS) proteins; cd10385"
                     /db_xref="CDD:198248"
     Site            order(279,281)
                     /site_type="other"
                     /note="Elongin-C binding interface [polypeptide binding]"
                     /db_xref="CDD:198248"
     Site            order(289,307,309,317,330)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198248"
     Site            order(340,342,360)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198248"
     Region          380..435
                     /region_name="SOCS_SOCS4"
                     /note="SOCS (suppressors of cytokine signaling) box of
                     SOCS4-like proteins. Together with CIS1, the CIS/SOCS
                     family of proteins is characterized by the presence of a
                     C-terminal SOCS box and a central SH2 domain. The general
                     function of the SOCS box is the...; cd03738"
                     /db_xref="CDD:239707"
     Site            order(381..386,392,399,405,410)
                     /site_type="other"
                     /note="putative elongin B/C interaction [polypeptide
                     binding]"
                     /db_xref="CDD:239707"
     CDS             1..436
                     /gene="SOCS4"
                     /coded_by="XM_058829056.1:243..1553"
                     /db_xref="GeneID:131574571"
ORIGIN      
        1 maenkdssak nadvrpkssr srsadrkdgy vwsgkklsws kksehcpdve tanaagrsgt
       61 nlrsqerkys cssieldldr scghrflgrs lkqklqdavg qcfpikncss rhasglpskr
      121 kihiselmld kcpfpprsel afrwhlikrh tapispkaee wiiadlsqhe eredqlrded
      181 ianggmdsps pscdftdsss srgeprpelv tgkvarssrd esdmdsddev itlctssrkr
      241 nkpkwetdde llrmetppky htqidyvhcl vpdllqinnn pcywgvmdky aaeallegkp
      301 egtfllrdsa qedylfsvsf rrysrslhar ieqwnhnfsf dahdpcvfhs pditgllehy
      361 kdpsscmffe pllstplnrt fpfslqhicr tvicncttyd gidalpipps vklylkeyhy
      421 kskvrvlrid vpeqqs
//