KEGG   Sphingomonas abietis: PBT88_01260
Entry
PBT88_01260       CDS       T09690                                 
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sabi  Sphingomonas abietis
Pathway
sabi03410  Base excision repair
sabi03430  Mismatch repair
sabi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sabi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    PBT88_01260 (recJ)
   03430 Mismatch repair
    PBT88_01260 (recJ)
   03440 Homologous recombination
    PBT88_01260 (recJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sabi03400]
    PBT88_01260 (recJ)
DNA repair and recombination proteins [BR:sabi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     PBT88_01260 (recJ)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     PBT88_01260 (recJ)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      PBT88_01260 (recJ)
SSDB
Motif
Pfam: DHH DHHA1 RecJ_OB
Other DBs
NCBI-ProteinID: WBO22811
Position
244471..246240
AA seq 589 aa
MTLAAPCGVTRSILGQPWRWRGLASDDGDAGFRPDALVDQLLMARGCPREALDSHRVPTI
RGFMPDPSIFRDMDKAADRLADAVERQERVTIFGDYDVDGATSAALMIRLLRDLGLHAGA
YIPDRLLEGYGPSADALVMLAEQGASLVVTVDCGAMAFEALQAAHDAGLDVIVVDHHKCA
TVLPVAHALVNPNRLDEGEGAAHGHLAAVGVAFLLGAALIRTLRARGWFATRAEPKLLEL
LDIVALGTVADVAQLKGLNRAFVAQGLKVMAGRRNIGLAALIEASRLTRNPTATDLGFAL
GPRINAGGRVGRADLGVRLLTTQDEGEARAIAAELNQFNEDRRAIEQAVREEAEAKLAGQ
GNRAVSVISGAGWHPGVIGIVASRIKERSGKPAIVVALDGGIGKGSGRSISGVDLGAAVL
AAKDMGLLVAGGGHAMAAGLTIDEAKLDAFAEFLDERLAADVAIASDKRALLLDAVVGPG
GVTPALVEALEAGGPYGAGWPGPRVAAGRVRVVKADVVGTGGHVRAIVAGDDGRSIKAMA
FGSADTALGQALLGAGSTRKLWLAGRARIDDWAQRPSAELHVDDAAWAD
NT seq 1770 nt   +upstreamnt  +downstreamnt
atgacccttgccgcaccctgtggagtgacccgttcgatcctcggccagccgtggcgctgg
cggggcctggccagcgacgatggcgatgccggcttccggcccgatgcgctggtcgatcag
ctgctgatggcgcggggttgcccgcgggaggcgctcgacagccatcgcgtgccgaccatc
cgcggcttcatgcccgatccgtcgatcttccgcgacatggacaaggccgccgatcgtctg
gccgatgccgtggagcgccaggagcgggtgacgatcttcggcgactatgacgtcgatggg
gcgacctcggcggcgctgatgatccgcctgctgcgcgacctcggcctccatgccggcgcc
tacatccccgatcgcctgctcgaaggctatggcccgtcggcggacgcgctggtgatgctg
gccgaacagggcgcgagcctggtcgtcaccgtcgattgcggtgcgatggcgttcgaggcg
ctgcaggccgcgcacgacgccgggctcgacgtgatcgtggtcgatcatcacaaatgcgcg
acggtgcttcccgtcgcccacgcgctggtcaacccgaaccggctcgacgagggcgagggc
gcggcgcatggccatctcgccgccgtcggcgtcgccttcctgctcggcgccgcgctgatc
cgcaccctgcgcgcgcggggatggtttgcaacgcgtgccgaaccgaagctgctggagctg
ctcgatatcgtcgcgctcggcacggtcgccgacgtggcgcagctgaagggactcaaccgc
gcgttcgtggcgcagggattgaaggtgatggcgggtcgtcgcaacatcggcctcgccgcg
ctgatcgaagcctcgcgcctcacccggaacccgaccgcgaccgatctcggtttcgcgctc
ggcccccggatcaacgccggcgggcgggtcggccgcgccgatctcggcgtccgcctgctg
accacgcaggacgagggcgaggcgcgcgcgatcgccgccgagctcaaccagttcaacgag
gatcgccgtgccatcgagcaggcggtgcgcgaggaggccgaggcgaagctcgccggccag
ggcaaccgcgccgtttcggtgatttcgggtgccggctggcaccccggcgtgatcggcatc
gtcgccagccgcatcaaggagcgttcgggcaagccggcgatcgtcgtcgcgctcgatggc
ggcatcggcaagggatcggggcgctcgatctcgggcgtcgatctcggcgcggcggtgctc
gccgccaaggatatgggcctgctggtggcgggcggcggccatgcgatggcggcggggctg
accatcgacgaggccaagctcgatgccttcgccgaatttctcgacgagcgcctcgccgcc
gatgtcgcgatcgcatcggacaagcgcgcgctgttgctggatgcggtggtcggtccgggc
ggcgtcactccagcgctggtcgaggcgctggaggcgggcggcccttacggcgccggctgg
cccggcccgcgcgtcgcggcgggccgggtgcgggtggtgaaggccgatgtcgtcggcacc
ggcggccatgtccgcgcgatcgtggccggagacgatggccgctcgatcaaggcgatggcc
tttgggtcggccgataccgcgctcggccaggcgctgctcggggcgggttcgacgcgcaag
ctgtggctggccggccgggcgcggatcgatgactgggcgcagcgtccgtcggccgaactg
catgtcgatgacgccgcctgggccgattga

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein domain (3)   
   Pfam (3)   
All databases (4)   

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