KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111950952
Entry
111950952         CDS       T05762                                 
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
  KO
K14327  regulator of nonsense transcripts 2
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03013  Nucleocytoplasmic transport
salp03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:salp00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    111950952
   03015 mRNA surveillance pathway
    111950952
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:salp03019]
    111950952
Messenger RNA biogenesis [BR:salp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     111950952
   mRNA cycle factors
    P-body specific factors
     111950952
SSDB
Motif
Pfam: MIF4G Upf2
Other DBs
NCBI-GeneID: 111950952
NCBI-ProteinID: XP_023824675
Position
LG3:12888437..12910367
AA seq 1281 aa
MLAEGKRSLNMDEKEVSSFSNKEKDREGDRRPASSRDKVKDESKMSGKKDIGKAAEEKRR
RLEEDKRKKEEKERKRKEEEKQKAEEEQRKKEEEEKKQQEEEERKVQEEEAKRQREEEAA
QLKEKEEGHQLHQEAWERHQCRKELRIRNQNAHEGRPEETFFSRLDSSLKKNTAFVKKLR
TLTEQQREALSNDFGSLNLSKYIGEAVGSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPL
LLQAWKRHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKSIIGTDR
ETHTHVSVVISFCKHCGDDIAGLVPRKVKAAREKFDLAFPPSEIINTEKQQPFQNLLREY
FTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADF
LDENMPELPLDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENMVDLKAFVP
AILFKDNEKGKDKEEAAGKEAKDAAATTEELELELEALDIADDPLELDGPDEAENEAELA
KKLLDEQGKDEEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSN
RRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVADDLCSILKGDFRFHIRKKDQINI
ETKNKTVRFIGELAKFKLFSKTDTLHCLKMLLSDFSHHHIEMACTLLETSGRFLFRSPDS
HLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVRKKRPPLQEYIRKLLY
KDLSKVTTEKVLRQMRKLPWQDPESKGYLICCMVNIWNIKYNSIHCVANLLAGLVAYQED
VGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISFG
VNPDGSPSPLDPPEHLFRIRMVCTLLDTCGQYFDRGSSKRKLDCFLIYFQRYIWWKKSVE
VWSAEHQFPIDIDYMISDTLELLRPKMKLCISLEDSTRQVTELEREFLVKLGLAMDGQKD
GRPSSAMGSEGEALDEDDDDDDEEGGADTEEQSGNESEMNEPEEEEGSENEEEEREEEEE
ENTDYLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAV
KVHQLDVAIPLQLKSQLKKGPGGPVCSGEGDADISDTMQFVMLTRKGNKQQFKILNVPLS
SHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMASLAQRPAPANTNRERRPR
YQHPKGAPNADLIFKTGGRRC
NT seq 3846 nt   +upstreamnt  +downstreamnt
atgcttgctgagggcaagagatcattaaacatggatgagaaagaggtgagctcctttagt
aacaaggagaaagacagagagggtgatagacggcccgcctcctcccgggataaagtgaag
gatgagtcaaagatgagtggcaagaaagatatcggtaaggccgcagaggaaaagaggagg
agacttgaggaggacaaaagaaagaaggaagaaaaggagcggaaacggaaagaggaggag
aaacagaaggcagaggaggagcagaggaagaaggaggaagaggagaagaagcagcaggag
gaggaggagaggaaagttcaggaggaggaggccaagagacagcgtgaagaggaggcagct
caactcaaggagaaggaggagggtcaccagctccaccaggaggcctgggagcgccaccag
tgccggaaggagctgcgcatccgcaaccagaacgcccacgagggccgtcccgaggagacc
ttctttagccgccttgactccagcttgaagaagaacacggcctttgtcaagaagctgcgc
acgctcactgagcagcagcgcgaagccctttccaatgacttcggctcgctcaacctcagc
aagtacatcggcgaggcggtgggctcggtggtggaggccaagctgaagatctctgatgtg
ggctgcgccgtgcacctgtgctccctctttcaccagcgctacgctgaattcgccccactg
ctcctccaggcctggaagaggcactttgaggcgcgcaaggaggagaaggcgcccaacgtg
agcaagctgcgcaccgacctgcgcttcatcgcagagcttaccatcgtgggcctgtttacg
gacaaggagggcctttcgctcatctacgagcagctgaagagcatcatcgggacagaccgc
gagacacacacgcatgtgtcggtggtcatcagcttctgtaagcactgcggggacgacatc
gcgggcctggtgcctcgcaaagtgaaggctgcacgggagaaatttgacctggccttccct
cccagtgagatcatcaacacggagaagcagcagcccttccagaaccttctgagggagtac
ttcacctcgctcaccaagcacctgaagaaggaccaccgcgagttgcagaacatcgagagg
cagaacaggcgtatcctccactccaaaggggagctgagtgaggacagacacaagcagtat
gaggagtttgctacgtcctaccagaagttgctggctaacacccagtctctggctgacttt
ctggatgagaacatgccagaacttccactggacaagactgtgcaggaagagcacggccct
ggcattgacatcttcacccctgggaagcccggggagtatgacctggaggggggcatctgg
gaggacgaggatgccaggaacttctacgagaacatggtggacctgaaggccttcgtcccc
gccatcctgttcaaagataacgagaagggcaaggacaaagaggaggctgctggtaaagag
gctaaagatgctgcggccaccacagaggagttggagttggagctcgaggctctagacatc
gctgatgaccctctggagctggatggacctgatgaggcagagaacgaggcagagcttgcc
aaaaaactgttggacgagcaaggtaaagatgaagaacaagaggatgaggaggcaagcacc
gggtcccacctgaagctcatcgtggacgccttcatccagcagcttcccaattgtgtcaac
agagacctcatagacaaggctgccatggatttctgcatgaacatgaacaccaagtcaaac
aggaggaagctggtccgggctctcttcaccgttcccagacaaaggttggatctgctgccc
ttttactcccgtctggtggccacccttcacccctgcatgtcagatgtggccgatgacctg
tgctccatactcaaaggagacttcaggttccatatccggaagaaggaccagatcaacatc
gaaacaaaaaataaaactgtaaggtttatcggggagctggcaaagttcaagctgttctct
aaaacggacactctgcattgtctgaagatgctgctgtcagacttctcccaccaccacata
gagatggcctgcaccctgctggagaccagtggacgcttcctcttcagatcccccgactcc
cacctccggaccagcgtccttctggagcaaatgatgcgtaagaagcaggcacagcacctg
gatgctcgctacgtgaccatggtggagaatgcctactactactgcaaccccccgcccatg
gagaagactgtcaggaagaagaggcccccgctgcaggagtacatccgcaaactgctctac
aaggacctctccaaggtcaccacggagaaggtgttgaggcagatgcgtaaactcccctgg
caggacccagagtctaaaggctacctgatctgttgcatggtcaacatctggaacatcaag
tacaacagcatccactgtgtggccaacctgctggccggccttgtggcctaccaggaggat
gtgggcatccacgtggtggatggggtcctggaggacatccgcctgggaatggaggtgaac
cagcccaagttcaaccagcgtcggatcagcagtgccaagtttctgggggagctctacaac
taccgcatggtggagtcagcggtcatcttccgcaccctcttctccttcatctcgttcggg
gtgaacccggacggcagccccagccccctggacccccccgagcacctgttccgcatccgc
atggtctgcaccctgcttgacacctgcggacagtactttgaccgcggctccagcaagagg
aagctggactgcttcctcatctacttccagaggtatatctggtggaagaagagtgtggag
gtgtggagtgcggagcaccagttccccatcgacattgactacatgatcagtgacaccctg
gagctcctccggcccaagatgaagctctgcatctccctggaagactccacacgacaggtc
accgagttggagagggagttcctcgttaaactgggactggccatggatggacagaaggac
ggccggccctcgagtgccatggggagtgaaggcgaggctctagacgaggatgatgacgat
gacgacgaagagggaggggcggacacagaggaacagtctggcaatgagagcgagatgaac
gagccagaggaagaagaagggtctgagaatgaggaagaggagcgggaggaagaggaggag
gagaacactgactatctgaccgactccaacaaggagaacgagacggacgaggagaacaat
gaggtgaccatccgtggtggcggtctgaagcatgtggcatgtgctgaggatgaggacttc
atccaggctctggacaagatgatgctggagaacttgcagcagcggagcggggaggcggtg
aaggtgcaccagttggacgtggccatccccctgcagctgaagagccagctgaagaaaggc
cctggcggacccgtctgctctggggagggggacgcagacatctcagacaccatgcagttt
gtcatgctcacgcgcaagggcaacaagcagcagtttaagatcctgaacgtgcctttatcc
tcccacctggctgccaaccacttcaaccagcagcaggcagagcaggaggagaggatgagg
atgaagaagctcactctggacatcaacgagagacaggagcaagaagactaccaagaaatg
atggcgtctctggcccagcggcccgctccggccaacaccaaccgggagcggcgcccgcgc
taccaacaccccaaaggggcacccaacgccgacctcatcttcaagaccggaggaaggaga
tgctga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (6)   
   RefSeq(pep) (6)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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