KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111951397
Entry
111951397         CDS       T05762                                 
Name
(RefSeq) regulator of nonsense transcripts 2
  KO
K14327  regulator of nonsense transcripts 2
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03013  Nucleocytoplasmic transport
salp03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:salp00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    111951397
   03015 mRNA surveillance pathway
    111951397
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:salp03019]
    111951397
Messenger RNA biogenesis [BR:salp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     111951397
   mRNA cycle factors
    P-body specific factors
     111951397
SSDB
Motif
Pfam: MIF4G Upf2
Other DBs
NCBI-GeneID: 111951397
NCBI-ProteinID: XP_023825230
Position
LG24:complement(2655419..2672946)
AA seq 1276 aa
MPAEGKRSLNMDEKEVSSFSNKEKDRDGDRRPASSRDKVKDEAKMSGKKDIGKAAEEKRR
RLEEDKRKKEEKERKRKEEEKQKAEEEQRKKEEEEKXQQEEQERKVQEEEAKRQREEEAA
QLKEKEEGHQLHQEAWERHQCRKELRVRNQNAHEGRPEETFFSRLDSSLKKNTAFVKKLR
TLTEQQRDALSNDFGSLNLSKYIGEAVGSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPL
LLQAWKRHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKSIIGTDR
ETHTHVSVVISFCKHCGDDIAGLVPRKVKAAREKFGLAFPPSEIINTEKQQPFQNLLREY
FTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQHEEFATSYQKLLANTQSLADF
LDENMPELPLDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENMVDLKAFVP
AILFKDNEKGKDKEEAAAKEAKDAAATTEELELELEALDIADDPLELDGPDEAENEAELA
KKLLDEQEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNRRKL
VRALFTVPRQRLDLLPFYSRLVATLHPCMSDVADDLCSILKGDFRFHIRKKDQINIETKN
KTVRFIGELAKFKLFSKTDTLHCLKMLLSDFSHHHIEMACTLLETSGRFLFRSPDSHLRT
SVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVRKKRPPLQEYIRKLLYKDLS
KVTTEKVLRQMRKLPWQDPESKGYLICCMVNIWNVKYNSIHCVANLLAGLVAYQEDVGIH
VVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISFGVNPD
GGPSPLDPPEHLFRIRMVCTLLDTCGQYFDRGSSKRKLDCFLIYFQRYIWWKKSVEVWSA
EHQFPIDIDYMISDTLELLRPKMRLCISLEDSARQVTELEREFLVKLGLAMDGQKDGRPS
SAMGSEGEALDEDDDDDDEEGGADTEEQSGNESEMNEPEEEEGSENEEEEREEEEEENTD
YLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAVKVHQ
LDVAIPLQLKSQLKKGPGGPVCSGEGDADISDTMQFVMLTRKGNKQQFKILNVPLSSHLA
ANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMASLAQRPAPANTNRERRPRYQHP
KGAPNADLIFKTGGRR
NT seq 3831 nt   +upstreamnt  +downstreamnt
atgcctgctgagggcaagagatcattaaacatggatgaraaagaggtgagctcctttagt
aacaaggagaaagacagggatggtgatagacggcccgcctcctcccgggataaagtgaag
gatgaggcaaagatgagtggcaagaaagatattggtaaggctgcagaggaaaagaggagg
cggcttgaggaggacaaaagaaagaaggaagaaaaagagcggaaacggaaagaggaggag
aaacagaaggcagaggaggagcagaggaagaaggaggaagaggagaagaascagcaggag
gagcaggagaggaaagttcaggaggaggaggccaagagacagcgtgaagaggaggcagct
caactcaaagagaaggaggagggccaccagctccaccaggaggcctgggagcgccaccag
tgccggaaggagcttcgcgtccgcaaccagaacgcccacgagggccgtcccgaggagacc
ttctttagccgccttgactccagcttgaagaagaacacagcctttgtcaagaagctgcgc
acgctcaccgagcagcagcgcgatgccctctccaacgactttggctcgctcaacctcagc
aagtacatcggcgaggcggtgggctctgtggtggaggccaagctgaagatctctgacgtg
ggctgcgccgtgcacctgtgctccctcttccaccagcgttacgccgaattcgccccactg
cttctccaggcctggaaaaggcactttgaggcgcgcaaggaagagaaggcacccaacgtg
agcaagctgcgcaccgacctgcgcttcatcgcagagctcaccatcgtaggcctgttcacc
gacaaggagggcctgtcgctcatmtacgagcagctgaagagcatcatcgggacggaccgc
garacacacacgcatgtgtcagtggtcatcagcttctgtaagcactgcggggacgacatt
gcgggyctggtgcctcgcaaggtgaaggctgcacgggagaagtttggcctggccttccct
cccagcgagatcatcaacacggagaagcagcagccctttcagaaccttctgagggagtac
ttcacctcgctcaccaagcacctgaagaaggaccaccgcgagctgcagaacattgagagg
cagaacaggcgtatcctccactccaaaggggagctgagtgaggacagacacaagcagcat
gaggagtttgccacgtcctaccagaagctgctggctaacacccagtctctggctgacttt
ctggatgagaacatgccagagcttccactggacaagactgtgcaggaagagcacggccct
ggcattgacatcttcacccctgggaagcccggagagtatgacctggaggggggcatctgg
gaggacgaggatgccaggaacttctacgagaacatggtggacctgaaggccttcgtcccc
gccatcctgttcaaagataacgagaagggcaaggacaaagaggaggctgctgctaaagag
gctaaagatgctgcggccaccacagaggagttggagttggagctcgaggctctagacatc
gctgatgaccctctggagctggatggacctgacgaggcagagaacgaggcagagctcgcc
aaaaaactgttggacgagcaagaacaagaggatgaggaggcaagcaccgggtcccacctg
aagctcatcgtggacgccttcatccagcagcttcccaactgtgtcaacagagacctcata
gacaaggctgccatggatttctgcatgaacatgaacaccaagtcaaacaggaggaagctg
gtccgggctctcttcaccgttcccagacaaaggttggatctgctgcccttttactcccgt
ctggtggccacccttcacccctgcatgtcagatgtggccgatgacctgtgctccatactc
aaaggagacttcaggttccacatccggaagaaggaccagatcaacatcgaaacaaaaaac
aaaactgtaaggtttatcggggagctggccaagttcaagttgttctcaaaaacggacact
ctgcattgtctgaagatgctgctgtcagacttctcccaccaccacatagagatggcctgc
accctgctggagaccagtggacgcttcctcttcagatcccccgactcccacctccggacc
agcgtccttctggagcaaatgatgcgtaagaagcaggcgcagcacctggatgctcgctac
gtgaccatggtggagaatgcctactactactgcaaccccccgcccatggagaagactgtc
aggaagaagaggcccccgctgcaggagtacatccgcaaactgctctacaaggacctctcc
aaggtcaccacggagaaggtgttgaggcagatgcgtaaactcccctggcaggacccagag
tctaaaggctacctgatctgctgcatggtcaacatctggaacgtcaagtacaacagcatc
cactgtgtggccaacctgctggccggccttgtggcctaccaggaggacgtgggcatccac
gtggtggacggggtcctggaggacatccgcctgggaatggaggtgaaccagcccaagttc
aaccagcgtcggatcagcagtgccaagttcctgggggagctctacaactaccgcatggtg
gagtcagcggtcatcttccgcaccctcttctccttcatctcgttcggggtgaacccggac
ggcggccccagccccctggacccccccgagcacctgttccgcattcgcatggtctgcacc
ctgctggacacctgcggacagtactttgaccgaggctccagcaagagaaagctggactgc
ttcctcatctacttccagaggtatatctggtggaagaagagtgtggaggtgtggagtgca
gagcaccagttccccatcgacattgactacatgatcagtgacaccctggagctgctccga
ccaaagatgaggctctgcatctccctggaagactccgcgcgacaggtcaccgagctggag
agggagttcctcgttaaactgggactggccatggatgggcagaaggacggccggccctcc
agtgccatggggagtgaaggcgaggcgctagacgaggatgatgacgacgacgacgaagag
ggaggggcggacacagaggaacagtctggcaatgagagcgagatgaacgagccagaggaa
gaagaagggtctgagaatgaggaagaggagcgggaggaagaggaggaggagaacaccgac
tatctgaccgactccaacaaggagaacgagacagacgaggagaacaatgaggtgaccatc
cgtggtggcggtctgaagcatgtggcatgtgcggaggatgaggacttcatccaggctctg
gacaagatgatgctggagaacctgcagcagcggagcggggaggcggtgaaggtgcaccag
ttggacgtggccatccccctgcagctgaagagccagctgaagaaaggccctggcggaccc
gtctgctctggggagggggacgcagacatctcagacaccatgcagtttgtcatgctcaca
cgcaagggcaacaagcagcagtttaagatcttgaacgtgcctttatcttcccacctggct
gccaaccacttcaaccagcagcaggcagagcaggaggagaggatgaggatgaagaagctc
actctggacatcaacgagagacaggagcaagaggactaccaagaaatgatggcgtctctg
gcccagcggcctgctcctgccaacactaaccgggagcggcgcccgcgttaccaacaccct
aaaggggcacccaacgccgacctcatcttcaagaccggaggaagacgctag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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