KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111953219
Entry
111953219         CDS       T05762                                 
Name
(RefSeq) LOW QUALITY PROTEIN: apoptotic chromatin condensation inducer in the nucleus-like
  KO
K12875  apoptotic chromatin condensation inducer in the nucleus
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03013  Nucleocytoplasmic transport
salp03015  mRNA surveillance pathway
salp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:salp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111953219
  09122 Translation
   03013 Nucleocytoplasmic transport
    111953219
   03015 mRNA surveillance pathway
    111953219
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:salp03019]
    111953219
   03041 Spliceosome [BR:salp03041]
    111953219
Messenger RNA biogenesis [BR:salp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     111953219
Spliceosome [BR:salp03041]
 Complex C
  Other components
   EJC/TREX
    111953219
SSDB
Motif
Pfam: RSB_motif SAP RRM_1
Other DBs
NCBI-GeneID: 111953219
NCBI-ProteinID: XP_023828110
Position
LG3:23852564..23881199
AA seq 1602 aa
MADEDVTLNGKPLQSLRVADLKAALEQRCLPKSGAKNTLIKRLKGALMLENLQRTSTPHI
GLQPNSQIGEEMSQNSFIKQYLAQQQELLRQRLEREAREAAEADESPAGPEEEEHTEEGN
DSXSYNPDKHRPMPSQPPLTGAEEEGGGPMMMGHQGQGMMMGHQGQGMMMGKGQGMMSQG
MGQGMMSRRPDFGPGSVPQESSDAPGGPGSWMQQRPSLQHGLHHEEPTTPSPPRAVASLS
VRVLGDPERQGLPPSMPPRAQTQEKEGTAPADDDRPAHSVLHLSRSARAAAGSNSVQEDC
DDDDDSSEEDEDEWGPAARRGGGGGRGLAPPPQPSPSVPAARERSRRKLQPPQHIPPQQV
VHQPPMQLRQPTPPPSPPPELSFPLPDTPKQSPPDMDEEPEGAGAGVSVRPPPGGLQRQD
SDSSSRSSSPEPRAKRRPGPLSLLARKMASEGAYGKRGEGASADGQTGPRGEASRPGDGV
GSSPGAGAGPGVEVVMFPGASITHTGGSSTGHTGFVTVPEVPAPVVMFGSGAQSHPLLSV
AAVPSITLTTKPQGPSGETAQKKTEKETKQAEEKERKMKQVEKVEKESHLPPWQRGRDLT
LPSASSQFGSGGSEEPVMDQGDTPKKSPFGRDKPLSSAPGSAMATTSSPPAITPKKPRMF
SDTSSGSMISPPKPVQQGSVVVTTPGELPEPHGVSERPQVVLVSGAQQHTDDTMEVTALN
KVSVEKPGWKAGGDDEKMEKERASLAEKERASLAEKERASLAEKERCHARRRRSVPAWRR
RSVPAWRRRSVPACGRRSVPAWRDRSVPSQAEKERASQAEKERASQAEKERASLAEKERA
SLAEKERACQAEKERACQAEKERACQAEKERASQAEKERASQAEKGTSKPGETRRRGPEE
TVEVEPMGPVLPPSYPGKGEDERKGKEDERRRRKEDERKKEAERGRRGERVRHRRSSPSS
GGDSSSSDSGSSSSRSSGSTSSRDKKKKTGTGKGRGDEKRRLYKGGEKKQSAREVKQSSL
SEPSGPMEVERPDPGQTQPTPVGDPQNSEGCMEESTTPKAFAARKISLTTGSKTSPEGGA
AAAAGGEAESGTAAGRKRRWGSSTAVNAKKPSISITTDSLKSLIPDIKPSQDAVVDLHPD
DIQLSGDEDTTREDKGLKIRRTVTQVVPSENQENGQGEQDEEEEEKKQEHDRERTQKEKR
KDSYSEDTMESQSSAAHDTDAKKVTPSDTLVRRSISQQKSGVSVTIDDPVRTAKQPSPPR
GKVSNIVHVCNLVRPFTLGQLKELLNRTGSVVEDSFWIDKIKSHCYVTYSSTEEAVATRA
ALHGVKWPQSNPKVLSVDFCEQNELDFHRGLLTVDPREEHRPQPGVGPGGPKVRPGVLPP
LMDGRGDRGVVGGVRDQWAEREREMERRERTRAEREWDRDKVRDFGGKPGEERERGRRSR
SLDRERRRKERDGKEKKTDKKDEPPAKLLDDLFNKTKAAPCIYWLPLTEEQANQRGKERE
ERQKERERRRKEQQEEEDKKREEERKERIKSREKEGGAAVSTGSVSVRGSEGDRDRERER
GKEREGEKRRDSGGFRPRGPDTKPSTGFRRSRSRSNPRDKRR
NT seq 4809 nt   +upstreamnt  +downstreamnt
atggcggatgaagatgttacgctgaatggtaaacctctacaatcgctccgtgtggcagac
ttgaaagccgctttggagcaacgatgcctccctaaaagcggggcgaaaaatacactcatt
aagcgactgaaaggggctctaatgttggagaatcttcagaggacctccactccccatatt
gggctccagcccaactcccagattggggaggagatgagccaaaacagctttataaagcag
tacctggctcagcagcaggagctcctccgccagaggctggagagagaggccagggaggca
gccgaggccgacgaaagcccagcgggccctgaggaggaggagcacacagaggagggcaac
gacagcyattcctataaccctgacaagcatcgccccatgccctcccagcccccactgacc
ggggctgaggaagagggaggagggccaatgatgatggggcaccagggccaagggatgatg
atggggcaccagggccaaggaatgatgatggggaaaggccaggggatgatgtcccagggt
atgggccaagggatgatgtctcgcagaccagactttggcccaggctctgtgcctcaggag
tcttctgacgcccccggaggtcctggatcctggatgcagcagcgtccctccctccaacat
ggcctccaccacgaggagcccaccaccccctccccgccacgagctgtggcctccctgtcg
gtgcgcgtcctaggggaccctgagcgccagggcctgcccccgtccatgcccccccgcgcc
cagacccaggagaaggaaggcaccgccccggcggatgacgaccgacccgcccactctgtc
ctccacctcagccgctccgcccgggcagcagctggcagtaacagtgtccaggaagactgt
gacgatgatgatgacagcagtgaggaggatgaagatgagtggggacctgcggcgaggaga
gggggcggtggcggaagagggttagcccctcccccccagccttcccccagcgtcccagcc
gccagagagagatctagacgcaagcttcagcctccgcaacacatcccccctcagcaggta
gtacaccagccccccatgcagctccgccagcccaccccgcccccctctccacccccagag
ctctccttccccctccccgacacccccaaacagagcccgcccgacatggatgaggagcca
gaaggagcaggggctggggtgtccgtccgcccccctccaggtggcctccagaggcaggac
tctgactccagctcccgatccagcagcccagagccccgagccaagcgacgacccggaccc
ctctccttgctggctcgcaagatggcgtccgagggagcttacgggaagagaggcgagggt
gcgtcggcggacggccagacaggtcctcgaggggaggcttccagaccaggagatggagtt
ggcagcagcccaggagctggagcaggaccgggggttgaggtggtcatgttccctggggct
tctatcacccacacaggaggcagcagcacagggcacacaggatttgtcactgtacctgag
gtccctgcaccagtggttatgtttggatcaggagcccagtcccatcctctgctgtctgtg
gcagctgtccccagcataaccctcaccaccaagccccagggtccatctggagagacggca
cagaagaagacagagaaagaaacaaagcaggcggaggaaaaggagaggaagatgaagcag
gtggagaaggtggagaaggagagtcacctgccgccatggcagcgtggacgtgacttgacg
cttccatctgcgtcttcacaatttgggtctgggggttcagaggagcctgtgatggaccag
ggagacaccccgaaaaagtcacccttcggcagggacaaacccctctcctccgctcccggc
tcagccatggcgaccaccagctccccgcctgccatcacccccaagaagccccgcatgttc
tccgacacctcttccggctccatgatctcccctcccaaacctgtgcagcaggggtcagtg
gtggtgaccaccccaggggaactccctgaaccccatggtgtatctgagagaccccaggta
gtccttgtctcaggggcacagcagcacacagacgacaccatggaggttaccgcactgaac
aaggtgtccgtagagaagcctggatggaaagctggaggagacgatgagaagatggagaag
gagcgtgccagcctggcggagaaggagcgtgccagcctggcggagaaggagcgtgccagc
ctggcggagaaggagcggtgccacgctcggcggagaaggagcgtgccagcctggcggaga
aggagcgtgccagcctggcggagaaggagcgtgccagcctgcgggagaaggagcgtgcca
gcctggcgagacaggagcgtgccaagccaggcggagaaggagcgtgccagccaggcggag
aaggagcgtgccagccaggcggagaaggagcgtgccagcctggcggagaaggagcgtgcc
agcctggcggagaaggagcgtgcctgccaggcggagaaggagcgtgcctgccaggcggag
aaggagcgtgcctgccaggcggagaaggagcgtgccagccaggcggagaaggagcgtgcc
agccaggcggagaaggggacttctaaacccggggagaccaggagaaggggacctgaagag
actgttgaggttgagcccatgggacctgttctacccccttcttacccaggtaagggagaa
gatgagaggaaggggaaggaagatgagaggaggaggaggaaggaagatgagaggaagaag
gaagcagagcgaggcaggcgtggggagagggtgaggcacaggaggtcatctccctctagt
ggtggcgactcttcatcctcggactctggatcctcttcytcacgttcctctggctccacc
tcctcccgggacaaaaaaaagaagactggcacaggaaaaggaagaggggatgaaaagaga
agactgtacaaaggaggagagaagaaacaatctgccagggaggtaaagcagtcttccctg
tcagagccatctggccctatggaggtggagaggccagacccaggccagacccagcccacc
cccgtcggagacccacagaacagtgagggctgcatggaggagagcaccactcctaaagcg
ttcgctgcacgcaagatctccttgaccacaggcagtaagacgtctccagagggaggagca
gcagcagcagcagggggggaggcagagtccgggaccgccgctgggaggaagaggaggtgg
ggatccagcacggccgtcaacgccaagaaaccatccatcagcatcaccacagactcactc
aagtctctgatcccagacatcaagcccagtcaggatgctgtggtmgatctccaccctgat
gacatccagttgtctggggacgaggacaccaccagggaggacaagggcctcaagatcaga
cgcactgtcacacaggtggtcccaagtgaaaaccaggagaatggccaaggagaacaagat
gaagaggaggaggagaagaaacaggagcatgacagagagaggacacagaaagagaagagg
aaggacagctactcagaagacaccatggagtctcagtcctccgctgcgcacgacaccgac
gctaagaaagtcactcccagtgatacgctggtgcgtcgctccatcagccagcagaagtca
ggtgtgtctgtcaccatcgacgacccggttcgcaccgccaaacagccctctccgcccaga
ggcaaagtctccaacatcgtccacgtctgtaacctggtacgacctttcacgctgggtcag
ctgaaggagctgctgaacaggacaggctcagtggtagaggatagcttctggatcgacaag
atcaagtctcactgctacgtcacttactccagcacagaggaggctgtggccacacgagct
gcgctccacggggtgaagtggccccaaagcaaccctaaggttctcagtgtggacttctgt
gagcagaacgagctggactttcacagaggcctactgaccgtggatccaagagaggagcac
cgcccccagcctggtgtgggtcctggkggtcccaaagtccgaccgggcgtgctgccccct
ctgatggacgggcgcggggaccgcggcgtggtcggaggggtgcgggaccagtgggcggag
agagagagggagatggaacgccgggagaggaccagggcggaacgtgagtgggaccgggac
aaggttcgagacttcggaggcaaaccaggagaggagagggagagggggaggagatctcgc
tccctggatagagagagaaggcggaaggagagggacggcaaggagaagaagaccgacaaa
aaggatgagcctcctgccaaattactagacgacctcttcaataagaccaaagcagctccc
tgtatatactggctccccctcactgaagaacaggcaaaccagaggggaaaagaacgggaa
gagcgacagaaagaacgagagaggaggcggaaagaacagcaggaggaggaggacaagaag
cgagaggaggagagaaaggagagaattaaaagcagagagaaggagggaggagctgcggta
agcactggaagtgtgagtgtccggggatctgagggagaccgagatagagaaagggagcga
gggaaggagagagagggggagaagaggagggacagtggtggattcagacccagaggtcct
gatactaaaccctctactgggttccgacgctcccgtagccgtagcaacccccgagacaaa
cgccgttga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (7)   

Download RDF
DBGET integrated database retrieval system