KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111956514
Entry
111956514         CDS       T05762                                 
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03008  Ribosome biogenesis in eukaryotes
salp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:salp00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    111956514
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111956514
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:salp03019]
    111956514
   03009 Ribosome biogenesis [BR:salp03009]
    111956514
   03016 Transfer RNA biogenesis [BR:salp03016]
    111956514
   03036 Chromosome and associated proteins [BR:salp03036]
    111956514
Messenger RNA biogenesis [BR:salp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     111956514
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     111956514
Ribosome biogenesis [BR:salp03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    111956514
Transfer RNA biogenesis [BR:salp03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    111956514
Chromosome and associated proteins [BR:salp03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    111956514
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12
Other DBs
NCBI-GeneID: 111956514
NCBI-ProteinID: XP_023832735
Position
LG32:complement(14182610..14208874)
AA seq 1692 aa
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
VLPSEARFDSNCITPGTDFMARLQEQLKYFVNSKLSTDNAWKGVNVYLSGHETPGEGEHK
IMEFIRRENSEPGHDPNTRHCLYGLDADLMMLGLTSHEPHFSLLREEVRFGGKKNQKRIT
APEETTFHLLHLSLFREYIDYEFSEVKNKISFEYDLERIIDDWILMGFLVGNDFIPHLPH
LHINQDALPLLYRTYISVLPTLGGYLNENGHLNLGNFEKYLEKLSEFDREHFNEVFVDLK
WFESKVGNKYLNEAAGRAAEEAHSKDARKKDLDSLHLTTLDGGKDRAPGRGFEEDGEEED
MFEAEFRQYKRTYYMTKMGVEVVSDEFLANQALCYVEGIQWILHYYYHGVQSWSWYYPHH
YAPFLSDVRNIAHLKLTFDMGKPFMPFQQLLGVLPAASKDLLPQSYRHLMTSENSSIIEY
YPLDFKTDLNGKQQEWEAVVLIPFIDERCLLAAMEPYNDHMTKAEKARNCHTECAVYSYH
AELDYPYTSTLSELFPNIMHCHVRVTSVPMDAWHVSLSHVGRSDNSSQLYFLGFPTLQHI
RHKFYKKKHGVVVFQQSSRGENMMLEITRSKEEPVCGDVAALVLGRSVFVNWPHLEEARV
VAVSDGESKFFLEEPAGVQKLYDRDSPPPTKVTYLSDKEQKDWVKDVQGITEHFSKRKGI
VVNETAVVLYGQLLTGRKYVPGQSGQVHLEKQWSKQIMPSAYQTIVKDIKAFDSSSTRFQ
TLEELFPPTTTVFMVGNPYYGAXGEVQESSDVIKEGRVWVVFTVPCEPPMEALIQNQHKY
CVKYSPGYVLASRLGITSYLVSRFSGSIFVGRGSKKNPHGEQKANVGLNLKFNKKNEEVP
GYTKRTEKEWLYSDAVEELMSEYLDRFSEVFDLVSRNSHDDVFYEDDIWPAEYENGAEKV
KEITSWLKTHPVADIARTSCDLQILDKAIVERIEEEVLKAKVKKSSEKVRVTVRPRLLFR
PLEQQHGVVPDPDAEYHLFDRVVNVRESFSVPLGLRGTVIGIKAADREAEVLYEVVFDEE
FAGGLTIRSAAGRGYRLPPCALINLSHGGRVEQGFHKLTAVVKPQPSSSHQHNKGQLGGL
NHSPRSPFISTQQQNGRQNILRADTQGNKNSAHKASPKPKGKDEEFSNVWQSLQSSGMPQ
KPPAHWQQDNSGKSAWGTGSPGQEVQFQGQQGRNQPQSQQPQPPKPGPVGSIRLLKRNED
VNSLFPAQNATKKQTEFEELIANLKISKGNESAPPPPAKEPTSQTEEPLSPQSFAMKGTL
ALKEMLNIGAGPDSTSPASFNPQQQNKRRPTKKLAARMGDSVLPAAPAAAVSPLQSPQPS
MVPSVASELTRICMGLGMAPPDFTFMRSRQGLLVYQVKLSSGLVVQGPQCQSENEAKEKA
ALFALQRLNSVGSGFPLPPPLFSGVGQIRGAPMGPIPNIFGQSGGLLMPPQGYGPLHWGM
PLPPHQGQPFYGGTFPGARPQAPSVPIGSHNQFVPLQVTKKRVSSVKKPQEFCNAAHTAR
NQAPGSEFPSHSQPSLSPAPSTPPKTTQVAGTPSTPQTPRQNPSGQGHTPGSASKRKHRK
LAVNFEAAKVQE
NT seq 5079 nt   +upstreamnt  +downstreamnt
atgggagtgccgaaattctaccgatggatttctgaaagatacccatgcctgagtgaagtt
gtcaaggaacatcagatcccagagtttgacaacctctacctggatatgaatggcatcatc
caccagtgctcccaccccaacgacgaggacgtccacttccgtatctcggaggagaagatc
tttgcggacatcttccactacctggaggtgctgttcaggatcatcaagcccaggaaggtg
ttcttcatggccgtggacggagtggctcctcgggccaagatgaaccagcagagaggcagg
agattcaggtcggccaaagaagcagaggacaagataaagaaagcccttgagaaaggagag
gtcttaccttctgaggcccgctttgactccaactgcatcacacctgggacggacttcatg
gccaggctacaggagcagctcaagtactttgtcaacagcaaactatccacagataatgcc
tggaaaggagtcaacgtctacctttccggacacgagactccaggagaaggagaacacaag
atcatggagtttatccgcagggaaaactctgagccaggccatgacccaaacacacgccac
tgtctctatggcctggatgctgacctgatgatgttaggtctgaccagccacgagccacac
ttctccctactcagagaagaggtccgctttggagggaagaaaaaccagaagagaataaca
gctccagaggagacaaccttccatctactgcacctgtcactatttagggagtacatagac
tacgagttctctgaagttaagaacaagatctcgtttgagtacgacctggagcgaatcatc
gatgactggatcctaatgggcttcctggttggaaatgacttcatccctcaccttcctcat
cttcacatcaaccaagacgccctgcctctcctctaccgcacctacatcagtgtgctgcca
acgctgggagggtacttgaatgagaatggccacctgaacctgggcaactttgagaagtac
ctggagaaactgtccgagtttgacagggagcacttcaacgaggtgtttgtggatctcaag
tggtttgagagtaaggtgggcaacaagtacctgaacgaggccgcgggacgggcagcagag
gaggctcacagcaaggacgccaggaagaaagacctggactctctgcatctaactacgctg
gatggcgggaaggacagagcccctggtaggggttttgaggaggatggtgaagaagaggac
atgtttgaggcggagttcagacagtacaaacgcacctactacatgaccaagatgggagtg
gaggtggtctcagatgagtttctagcaaatcaggcgttgtgctatgtggagggaatccag
tggatcctgcattactattaccatggagtccagtcctggagctggtattaccctcaccac
tatgccccgttcctgtcagatgtgaggaacatagcccatctgaagttgacctttgacatg
ggcaagcctttcatgcccttccagcaactactgggagtcctgcccgctgctagcaaagac
ctgcttccccagagctacaggcacctgatgacatcwgagaattctagcatcattgagtat
taccctctggacttcaagacggacctcaacgggaaacagcaggagtgggaggcagtggtg
ctcatccccttcatcgacgagagatgtttgctcgctgcgatggagccttataacgatcac
atgaccaaggctgagaaggcccgaaactgccacacagagtgtgctgtgtacagctaccac
gctgagctagactacccttacacctccaccctgtctgaactgttccccaacatcatgcac
tgccatgtcagggtgacatcggttcccatggacgcgtggcacgtgtcgttgagccacgtg
gggcgcagcgacaacagcagccagctctacttcctcggcttccccaccctgcagcacatc
agacacaagttctataagaagaagcacggagtggtggtgttccagcagagcagccgagga
gagaacatgatgctggagatcacacgtagcaaagaggaacccgtgtgtggcgatgtggcg
gccctggtcctgggtcgctctgtgtttgtcaactggccccacctagaggaggccagggta
gtagcagtgtctgacggggagagcaagttcttcctggaggagccggcgggagtgcagaag
ctgtatgaccgggactctcctccccccaccaaggtmacctacctcagtgacaaggagcag
aaggactgggtgaaggacgtccagggcatcactgagcatttcagtaagcgtaagggcatc
gtggtgaatgagacggcggtggtgttgtatggccagctgctgacaggcaggaagtatgta
cctgggcagagcggacaggtgcacctggagaaacagtggtccaagcagataatgccctcc
gcctaccagaccatcgtcaaggatatcaaggcctttgactcgtcgtcgactcgcttccag
accctggaggagctgtttcccccgacgaccacagtgttcatggtggggaacccctactac
ggagccrtgggagaggtgcaggagtctagtgacgtcatcaaagagggacgagtgtgggtg
gtgttcacggtgccctgtgaaccaccgatggaagccttaatacagaaccagcataaatac
tgtgtgaagtacagtcccggctacgttctggcctctcgcctcggcatcaccagctacctc
gtctccagattctccggcagcatcttcgtcggcagaggatccaagaagaatccccacggg
gagcagaaggctaacgtgggtctgaacytgaagttcaataagaagaatgaggaggtgcca
ggttacaccaagagaactgagaaggagtggctctactctgacgctgtggaggagctgatg
tctgagtacctggataggttctctgaggtgtttgacctggtgtccaggaacagtcacgat
gatgtcttctacgaggacgacatctggcctgcggagtacgagaacggcgcggagaaggtg
aaggagatcacttcctggttgaagacccacccagtcgccgacatcgcccgcacgtcatgt
gacctgcagatcctggacaaggccatcgtggagcggatcgaggaggaggtgctgaaggct
aaggtgaagaagagcagcgagaaagtacgtgttactgtgaggccacgtttgctcttcagg
cccttagagcagcagcacggtgtggtccctgacccagatgcagaataccacctgtttgac
cgggtggtcaacgtcagagagagcttctctgtcccccttggcctcaggggaaccgtcatc
ggcatcaaggcagctgatcgggaggctgaggtgttgtatgaggttgttttcgatgaagag
tttgctggtggacttactatcaggagtgcggcgggccgtggctacaggctgcctccctgt
gccttaatcaacctgagccacgggggccgtgtagagcagggcttccacaaactgaccgcc
gttgtcaagccccagccttcctcctcccaccaacacaacaaaggacagctgggcgggctg
aaccactcaccgcgatcacccttcatctccacacagcagcagaatggcagacagaacatt
ctcagggcagacactcagggcaacaaaaactctgcacacaaagccagcccgaaacctaag
ggtaaagatgaggagttcagtaatgtgtggcagtctctgcagagctctggaatgccccag
aaaccaccagctcactggcaacaagacaattcgggtaagtctgcctggggtacagggtct
cccggacaggaagtgcagttccaagggcaacaaggcaggaaccaaccccagagtcaacaa
ccgcaacctcccaaacctggtcctgtaggaagtatcagactcctcaagagaaacgaagat
gtcaattctctgtttcccgctcagaacgctacaaagaagcagacagagttcgaggagttg
atcgctaacctgaagatctccaagggcaacgagtcagctccaccccctccagccaaagag
cccacgagccaaacagaggagccgctttctccgcagtcatttgctatgaagggaactctg
gccctgaaggagatgctgaacattggcgccggcccggactccactagtcccgcctcattc
aacccacagcagcagaacaagagacgacccaccaagaaactggcggcgaggatgggcgac
tctgtgttacccgcggccccagcagcagcagtctctcccctgcagtcccctcagccctcc
atggttcccagtgtggcctcagagctgaccaggatctgtatgggcctgggtatggccccg
cctgacttcaccttcatgcgcagcagacagggtctgctggtgtaccaggtgaagctctcc
agtggtctggtggtccaaggtccccagtgtcagtctgaaaacgaagccaaagagaaagca
gctcttttcgccctgcagcgccttaattcagtgggttctgggttccccctgccaccgcct
ctgttctctggrgtcggacagataaggggagcgcccatgggacccatccctaacatattt
ggtcaatcgggtggtctgttgatgcctcctcaggggtatggtcccctacactggggcatg
cccctcccgcctcaccagggccagcccttctacggaggcaccttccctggcgcccggccc
caggcaccctccgtccccatcggctcacacaaccagtttgtccccctgcaggtcactaag
aagcgcgtgtcctcagtcaagaagccccaggagttctgcaatgcggctcacacggccagg
aaccaagccccgggcagtgaattcccgtctcactcccaaccttccctatccccggccccc
tccacacccccaaagaccacccaggtagcggggaccccatccacgccccaaacaccacgc
cagaacccctcgggccaaggtcacacccccggctctgcctccaagaggaaacacaggaaa
ctggcggtgaacttcgaggcagccaaagtccaagaataa

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