KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111968545
Entry
111968545         CDS       T05762                                 
Name
(RefSeq) pinin
  KO
K13114  pinin
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03013  Nucleocytoplasmic transport
salp03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:salp00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    111968545
   03015 mRNA surveillance pathway
    111968545
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:salp03019]
    111968545
   03041 Spliceosome [BR:salp03041]
    111968545
Messenger RNA biogenesis [BR:salp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     111968545
Spliceosome [BR:salp03041]
 Complex C
  Other components
   EJC/TREX
    111968545
SSDB
Motif
Pfam: Pinin_SDK_N Pinin_SDK_memA Aconitase_C
Other DBs
NCBI-GeneID: 111968545
NCBI-ProteinID: XP_023849965
Position
LG9:complement(10425290..10430664)
AA seq 697 aa
MAVAVGSLQAQLEKAKESLKNVDDNIRKLTGRDPNELRPGQVRRPTIPGIGGGRGRGINL
LRRGLSDISGGPGGPPVKQRDIEGALLRLAGDQRGRRDSRHDSDAEDDDDVKKPVLQSSV
VATSKERTRRDLIQDQTMDERGKQRNRRMFGLLMGTLQKFKQESNVATDRQKKRIEIEQK
LEVQAEQERKKVEGERRELFEERRAKQTELRLLEQKVELAQLQEEWNVHNTKIVKYIRTK
TKPPIFFLPGRMCSATQKLLDESQKKMNVMFEERCEAFAEHLNKMEARPRRQSQRDTALG
KDLKKEDREEGKPTGQVVKVTGNRFDVEMEEEDEATIEEEKKEEGGEGIKRKEDRKKKPV
EKVGEQESKKGGTKADEMEEAEEDSQDTRIVEFRDVGEQMEVTAVVREAEGQARDGDQKM
EDSPVEVGNEKGVEEQQLVKAEKEPLHGQDLTAVSDDQEKSIEMQPTEDDEPCTEVATPL
LSECNPSVEVSDVTSMAPEVQIPLLEAGMDPEPLTTEQRQEADQGAIKQTTNAQPAQAQD
DAAAPKELAPPSKEASRGRKKSKDKKGGGGGRSSSSSSSSSSGSSSSGSSGSSSSGSSSR
SSSSSGSSSSSSSRSRSRGRKDKKRRRRPSERDRERKKAVVERSHKSSKGSGRESKGSKD
KSSKSDRKRTTSEGSRSGKRSSRGDRDRKSDRKEKRR
NT seq 2094 nt   +upstreamnt  +downstreamnt
atggcggtggcagtgggatctttgcaagcccagcttgagaaagcgaaagagagtttgaaa
aatgtagacgataatattcgtaaattaactggtcgggatcctaatgaattgagacctggc
caagttagacggccaaccatcccaggtattggaggaggtaggggtcgaggaatcaacttg
ttgagacgtggactctccgacatcagcggtggaccaggaggacccccagtgaaacagagg
gatattgaaggggccctcctgaggctggccggtgaccagagagggaggagagattcacgc
catgacagcgacgctgaagatgatgacgatgtcaaaaagccagtgttgcagtcatcagta
gtagctacctccaaggagcgtacacgtcgagacctgatccaggatcagaccatggatgag
aggggaaaacaaaggaatcgacgtatgtttggcctgttgatgggaacattacagaaattc
aagcaggaatctaatgtggcaacggataggcaaaagaaacgcattgagattgaacaaaaa
ttggaagttcaagctgaacaagagcgcaaaaaagtagagggcgaaaggcgagagctcttt
gaggagaggcgtgccaagcagacagagctgagactgttggaacagaaagtggagcttgct
cagttgcaagaggagtggaatgtgcacaacacaaaaattgtcaagtacatccgcacaaag
accaagccacccatcttctttctgcctgggaggatgtgctcagccactcagaagctctta
gatgagtctcagaaaaaaatgaatgttatgtttgaggagagatgcgaggcatttgctgag
catctgaataagatggaggctcggcctcggcgccagtctcagagggacaccgctctgggt
aaggacctgaagaaagaagatcgagaggagggtaagcccacgggtcaggtagtcaaagtg
acaggtaaccggtttgatgtggagatggaggaggaagatgaggcaacaatagaggaggaa
aagaaggaagaggggggtgagggtataaagcgtaaggaggacagaaagaaaaagccagta
gagaaagttggagagcaggagtctaagaagggggggactaaagcagatgagatggaggag
gctgaggaagacagtcaagacactagaatagtggagttcagagatgtgggggagcagatg
gaggttactgcagtagtaagggaggctgaagggcaggccagggatggggatcagaagatg
gaggatagtccagtggaggtaggtaatgagaaaggagtagaagagcagcaactggttaag
gcagaaaaggagccccttcacggtcaggacctcacagctgtgtcagacgaccaggagaag
agcattgaaatgcaaccaaccgaagatgacgagccatgtacagaagtggccacacccctg
ctctcagagtgcaaccctagtgtggaagtctctgatgtaacatctatggctcctgaggtt
cagatccccctactggaggctggaatggatccagagccgctcacaaccgagcagcgccaa
gaggctgatcaaggtgccataaagcagaccactaatgcccagcctgcccaggcccaggat
gatgctgcggctcccaaggagctggcgcccccgagcaaggaagccagcaggggacgtaag
aagtcaaaggacaagaagggaggtggtggtggcagaagcagcagtagctcatctagcagc
tcctccggctcctcgtccagtgggagctccggctcctcctctagtggctcctccagcagg
agcagctcctccagtggcagctcctccagctcttctagcaggagccgcagccgagggagg
aaggacaagaaacgtaggaggcggccatccgagagggacagggagcggaagaaggcagta
gttgagaggagccacaagtcgtccaagggcagtggtcgtgaatccaaaggttccaaagat
aagagctccaagtctgacaggaagaggaccacctctgaaggcagccggtcagggaagagg
tcctctcgcggtgacagggatcgcaagtcagataggaaggaaaagaggcgttaa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (7)   

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