KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111971646
Entry
111971646         CDS       T05762                                 
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03040  Spliceosome
salp04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:salp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111971646
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    111971646
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:salp03041]
    111971646
   04121 Ubiquitin system [BR:salp04121]
    111971646
   03400 DNA repair and recombination proteins [BR:salp03400]
    111971646
Enzymes [BR:salp01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     111971646
Spliceosome [BR:salp03041]
 Complex B
  Other components
   Prp19 complex
    111971646
 Complex C
   Prp19-CDC5 complex
    111971646
Ubiquitin system [BR:salp04121]
 Ubiquitin ligases (E3)
  U-box type E3
   111971646
DNA repair and recombination proteins [BR:salp03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    111971646
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Prp19 Beta-prop_EML_2 WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_WDR75_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_SCAP NBCH_WD40 Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_Vps41 PEP5_VPS11_N Beta-prop_DCAF4 Beta-prop_HPS5 U-box WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_Nup120_160 Beta-prop_DCAF12 PROPPIN Cytochrom_D1 B-prop_COPA_B_2nd Nucleoporin_N ATG16 zf-Nse Cep57_MT_bd Peripla_BP_2
Other DBs
NCBI-GeneID: 111971646
NCBI-ProteinID: XP_023854272
Position
LG13:complement(50951023..50961588)
AA seq 505 aa
MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGADPMNGQPLSEEQLIDIKVSHP
IRPKAPSSTSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVVAQAVASQPHVTAGGAGEPMEVSEQVGMIPEIIQKLQDK
ATVLTTERKKRGKTVPEELVRTEDLSKYRQVATHAGLHSASVPGILSLDLCPSDTNKVLT
GGADKNVVVFDKKEEQIIATLKGHTKKVTSVIYHPSQSVVFSASPDSTIRVWSVTGGNCV
QVVRAHEASVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDEAAGCALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHIGPVTSIAFSENGYYLATGAQDSSVKLW
DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGTDIRVYICKQWSEVLNFTEHTGVVT
GVAFGEHAQFLTSTGMDRSLKFYSL
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgtccctggtttgtgcaatatcaaatgaggtcccggaacacccgtgcgtgtcgccggtg
tccaaccaggtgttcgagcggcggctgattgagaagtacatagctgagaatggagcagac
cctatgaatggccagcctctgtcagaggaacagctgatagacattaaagtctctcacccc
atcagacccaaagctccctcatccactagcattccagccatcctcaaagctctgcaggac
gagtgggatgcggtgatgctccacagtttcaccttgaggcagcagctgcagacgacgcgt
caagaactaagccacgccctttaccagcacgacgccgcctgcagggtcatcgcccgtctc
accaaggaggtcactgccgccagagaggctctggccactctgaagccacaggcgggattg
gtggtggctcaggcagtcgcttcccagccccatgtcacggctggaggtgcaggagagccc
atggaggtcagtgagcaggtgggaatgataccagagatcatacagaagctgcaagacaag
gccacggtcctgaccacggagagaaagaagagaggaaagacagttccagaagagctggtc
cgaacggaggacctcagcaagtacagacaagtggctacccatgctggtctccacagtgcc
agtgtgcctgggatcctgtctctggacctgtgtccctccgacaccaacaaagtgctcact
ggcggggctgataagaacgtggtggtgtttgataagaaggaggagcagatcatcgcaacc
ctgaaaggacataccaagaaggtcacctctgtcatctatcacccctctcagtcggtagtg
ttctcggcctctccagacagcactatccgcgtgtggtccgttaccgggggcaactgtgtc
caggtggtgcgggctcacgaggcgagcgtcaccgggctctccctccacgccaccggagac
tacctgctcagctcctccgaggatcagtactgggccttctctgacatccaaacaggtcgt
gttctcaccaaggtcactgatgaggctgcaggatgtgctctgacctgtgcccagttccac
cctgacggtctgatcttcgggacggggacggccgactctcagatcaagatctgggacctg
aaggagcgcaccaacgtggccaacttccccggccacatcggccccgtcacctccatcgcc
ttctctgagaacggatactacctggctacaggtgcacaggacagctcagtgaagctctgg
gatctgaggaagctgaaaaatttcaaaaccatcaccctggacaacaactatgaggtgaag
tccctggtgtttgaccagagtgggacytacctggctgtgggtggcactgacatcagggtc
tacatctgtaagcagtggtccgaggtcctcaacttcacagaacacactggggtggtgaca
ggcgtggcctttggggagcacgcccagttcctcacctccactggaatggacaggagcctc
aagttctacagcctgtaa

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