KEGG   Syngnathoides biaculeatus (alligator pipefish): 133498230
Entry
133498230         CDS       T09681                                 
Symbol
tdp1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
sbia  Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:sbia00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    133498230 (tdp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sbia03400]
    133498230 (tdp1)
DNA repair and recombination proteins [BR:sbia03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     133498230 (tdp1)
SSDB
Motif
Pfam: Tyr-DNA_phospho RMMBL
Other DBs
NCBI-GeneID: 133498230
NCBI-ProteinID: XP_061670791
Position
3:21688532..21696655
AA seq 609 aa
MSQGSQHGKWSVSSSEDDDDELRLSGKSSKPPQLTVSNHSSLSSSILDIDSSSVEKKPER
SQVSTLVVGSEARQQAAKNQTNPIKYESSPSLAGKRKADPPDGSGWALSDSDGDEDAKSN
PPPGRKAPSPKRKKVGDARPPSPHGRVYYIDEPDDFFESSVPRLDDTFRFYLNKVTGLDR
KYNSGALHVRDILSPLFGTLKESVQFNYCFDIAWMLQQYPPEFRDRPILIVHGDKREAKA
RLVQQAQPFSHIRFCQAKLDIAFGTHHTKMMLLWYEEGFRVIILTSNLIRADWYQKTQGM
WMSPLFPRLPKGSSDTCGESPTFFKRDLLEYLASYRAAELEEWIQRIKEHDLSETRVYLV
GSTPGRYVGPDMERWGHLRLRKLLYEHTNCVPDEDQWPVVGQFSSIGSMGVDKTKWLAGE
FQRTLTTLGKASHRPNPPVHLLYPSVEDVRMSLEGYPAGGSLPYSIQTAQKQLWLHSYFH
RWQADTTGRTHAMPHIKTYMRASPDFTQLAWFLVTSANLSKAAWGALEKNNTQVMIRSYE
LGVLYVPPAFNMKTFQVRKNPFPVSSSSSGFLVPFDLPPTCYTTKDQPWIWNIPYSQAPD
THGNVWVPS
NT seq 1830 nt   +upstreamnt  +downstreamnt
atgtctcaaggcagtcaacacggcaaatggagcgtctccagcagcgaggacgacgacgac
gagcttcgtctgtcggggaagtcgtcgaagcccccacagttgaccgtgtccaatcacagc
tcgctgtcttcctccatcctggacatagacagcagctccgtggagaagaaaccagaacgg
tctcaagtttctactcttgtggtcggttctgaggccagacaacaggctgcaaagaaccag
acaaaccctatcaaatatgaatcctccccatctttagctgggaagaggaaggcggacccg
ccagatggttctggttgggcgctctccgacagcgacggcgatgaagatgcaaagagtaac
ccaccgccagggaggaaggctcccagtcctaaacgcaagaaggtgggggatgctcgccct
cccagcccccacggacgtgtgtactacattgacgagcccgatgacttttttgagtccagc
gttccccgtctagatgacacattcaggttttacctcaacaaggtgacgggcctggacagg
aagtacaacagtggagcgctgcatgtcagagacatcctctcgccattattcggcacttta
aaagaatctgttcagtttaactactgctttgacatcgcctggatgcttcaacaatatcct
ccagagttcagggatcgtcccatcctgattgtccacggggacaagcgggaggccaaggct
cggctggtgcagcaggctcagcccttttctcacattcgcttctgccaggccaaactggac
atcgcatttggaacgcaccacacgaagatgatgctgctgtggtatgaggagggcttccga
gtcatcatcctaacctccaatctcatccgagccgactggtaccagaagacacaggggatg
tggatgagtcctctgtttccacggttacctaagggcagcagcgacacctgtggcgagtcg
cccacctttttcaagagagacctgctcgaatatctggcatcctatcgggcggccgagctg
gaagagtggattcagcggatcaaagagcacgacctctcggagaccagggtgtatctggtg
ggctccactcctggccgatatgtaggaccagacatggagcgctgggggcacctgaggctc
aggaagctgctgtacgagcacaccaactgcgtccccgatgaggaccagtggccagtggtg
ggccagttctccagcatcggctccatgggcgtggataaaacaaagtggctggctggagaa
ttccagcgcacccttaccacgctgggaaaggcatcccatcgtcccaacccccccgttcac
ttgttatatccatcagtggaagatgtcaggatgagtttagaaggttatcctgctggtggc
tctcttccctacagcattcagacagcgcagaagcaactctggctgcattcctacttccac
cgatggcaagcagacacaactgggcggactcacgccatgccccacatcaagacttatatg
agggcatcacccgattttacgcagctagcctggttccttgtcactagtgccaacctgtcc
aaagcagcgtggggagctctggagaagaacaacacacaagtgatgattcgatcctatgag
cttggcgtcctctacgtgcccccagcctttaacatgaagacattccaagtgaggaaaaat
ccatttcccgtctcgtcatcatcctccggtttcctcgtgccatttgacctacccccaaca
tgctacacaactaaagatcaaccttggatctggaatattccgtatagtcaagctccagac
acacacggcaacgtttgggttccctcctaa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (6)   

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