KEGG   Stanieria cyanosphaera: Sta7437_4333
Entry
Sta7437_4333      CDS       T02406                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
scs  Stanieria cyanosphaera
Pathway
scs03030  DNA replication
scs03410  Base excision repair
scs03420  Nucleotide excision repair
scs03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:scs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Sta7437_4333
   03410 Base excision repair
    Sta7437_4333
   03420 Nucleotide excision repair
    Sta7437_4333
   03430 Mismatch repair
    Sta7437_4333
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:scs03032]
    Sta7437_4333
   03400 DNA repair and recombination proteins [BR:scs03400]
    Sta7437_4333
Enzymes [BR:scs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Sta7437_4333
DNA replication proteins [BR:scs03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Sta7437_4333
DNA repair and recombination proteins [BR:scs03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Sta7437_4333
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Sta7437_4333
   MMR (mismatch excision repair)
    DNA ligase
     Sta7437_4333
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Sta7437_4333
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD Nlig-Ia BRCT_2 PTCB-BRCT HHH HHH_3
Other DBs
NCBI-ProteinID: AFZ37802
UniProt: K9Y1E9
Position
4863053..4865083
AA seq 676 aa
MTATPEIQQKVVQLKQQLIQAGYAYYVLDNPIMEDAVYDQLYRQLQDLETQYPELITPDS
PTQRVGDQPASQFTSVKHNIPLYSLENAFNQQELAKWQERWQRQAPDVQDFAYVCELKID
GSALALTYENGILVRGVTRGDGVTGEDITQNIRTIRTIPLRLNLDNPPSIVEVRGEAFLP
IAVFEKINQEREQSGEALFANPRNAAAGTLRQLDAKVVDKRKLNFFAYTLHLPNHPNHPT
SQWESLELLQKMGFRVNPNRKLCKSLAEVEEYYQEWDTARRNLSYLTDGVVVKLNSYSLQ
QRLGFTQKFPRWAIALKYPAEEAPTIVKDIIVNVGRTGAVTPMAVMQPVQLAGTTVQRAT
LHNSDRVSELDLRIGDTVIIRKAGEIIPEVVRVMSQLRPPDTQPYQMPTHCPECNSQLIR
PKGEAVTRCVNSSCPAILRGSLIHWASRDALDIRGLGEKIVVLLIKQNLVKSIADLYSLE
IEQIAALERMGQKSAQKLLKAIADSKNQPYARVLYGLGIRYVGSVNAKLLAQNFPTIETL
STASVASLEAVYGIGEEIAQSVFQWFRIPANQLLVSALQKAGLQFKHHNSSSKTQSNLTA
NTFTGKTFVITGTLTTLKRNEAKDLIEQAGGKVTNSISNKTDYLVIGENPGSKLAKAQEL
NIPQLDENQLLELLKT
NT seq 2031 nt   +upstreamnt  +downstreamnt
gtgacagcaacaccagaaattcaacaaaaagtagttcaactgaaacaacaattaattcaa
gcaggatatgcttattatgtcctggacaatccgattatggaggatgctgtctatgatcaa
ctctatcgtcaattacaagatttagaaactcaatatccagaactaattactcctgatagc
ccaactcaacgagttggagatcaacccgcttcgcaatttacttcagttaaacacaatatt
cctctctatagtttagaaaatgcttttaatcagcaagaattagccaaatggcaagaaaga
tggcaacgacaagcaccagatgttcaggattttgcctatgtgtgtgagttaaaaattgat
ggctctgctttggctttaacttatgaaaatggcattttagttcgaggcgttactagagga
gatggagtgacaggggaagatattactcagaatatccgtactattagaactattcccttg
cgactcaatttagataacccaccctctatagtagaagtaaggggagaagcttttttaccc
atcgcagtttttgaaaaaattaatcaagagcgggaacaatctggagaagctttatttgct
aatcctcgtaatgctgctgctggtactttacgacagttggatgctaaagtcgtcgataaa
cgtaaattgaatttttttgcttatactttgcatcttcccaatcatccgaatcatcctact
tctcaatgggaatctttagagttattacaaaaaatgggatttcgggtaaatcctaaccgt
aaattgtgtaagtctctagcagaagtagaagaatattatcaagaatgggatacagctaga
cgtaatctttcttatttaaccgatggagtcgtcgtcaaactcaatagttactctctacaa
caaagattaggttttactcaaaaatttcctcgttgggcgatcgcacttaagtatccagcc
gaagaagctcctactatagttaaggatatcattgtcaatgtcggtagaactggcgcagta
accccaatggctgtgatgcaaccagttcaactagcaggaactaccgtacaaagggcaact
cttcacaatagcgatcgcgtttctgaattagatctccgtattggcgatacggtaattatc
cgtaaagcaggggaaattattcctgaagtagtaagggtaatgtctcaattgcgccctcct
gatacgcaaccctaccaaatgcctactcattgtcccgaatgtaattctcaattaattcgt
ccgaagggagaagcagtaactagatgtgtcaatagttcttgtccagctattttacgaggg
agtctaattcattgggcttcccgtgatgctttagatattaggggtttgggagaaaaaatt
gttgtccttctcataaaacaaaacctagtcaaatctattgccgatctttactctttggaa
atagaacaaattgctgcattagaaagaatgggacaaaaatccgcccagaaattgcttaaa
gcgatcgctgattctaaaaatcaaccctatgctagagttttatacggtttaggaattcgc
tatgttggtagcgttaatgccaaattattagctcaaaactttcccaccattgaaacctta
tccaccgcatctgtagcatctttggaagcagtttatggaataggagaagagattgctcaa
tcagttttccaatggtttagaattcctgctaatcaacttttagtatcagctttacaaaaa
gcaggattgcaatttaaacaccataattcttcgagcaagactcaatctaatctaactgca
aatacttttactggtaaaacttttgtcattactggtactttaaccacccttaaacgtaat
gaagccaaagatttaatcgaacaagcaggaggaaaagtaactaattcaattagtaataaa
actgactatttagtaataggagaaaatccaggttctaaattagctaaagcccaagaactt
aatattcctcaacttgatgaaaatcaacttttagagttacttaaaacttaa

  All links  
Gene (16)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (28)   

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