KEGG   Sinocyclocheilus grahami (golden-line barbel): 107597393
Entry
107597393         CDS       T04918                                 
Name
(RefSeq) LIM domain only protein 7-like isoform X1
  KO
K06084  F-box protein 20
Organism
sgh  Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh04520  Adherens junction
Brite
KEGG Orthology (KO) [BR:sgh00001]
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04520 Adherens junction
    107597393
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:sgh04121]
    107597393
Ubiquitin system [BR:sgh04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     107597393
SSDB
Motif
Pfam: DUF4757 PDZ LIM PDZ_6 DUF6288 PDZ_2 Retrotran_gag_3
Other DBs
NCBI-GeneID: 107597393
NCBI-ProteinID: XP_016143911
Position
Unknown
AA seq 1592 aa
MMSEYKEYRRSQVIAPKATTQYNQFLPSKEKQSGYVPAPLRKKRAARNDDNRRSWASPMY
TEDDGSFTSPSHESAGSDPSSITGLKSQTTAHPSLAYEYESSDSDADRMDPDVVIDDLAS
RRFHSLSSVAPTNFAIPMSQLEAAAIPCTTRSQVAVSNVSRQTLTHLSSQSQPLEKTYRR
PVSTGVCIYDDSEEEDDEFGYADPVQDDLYARKAGLRPQPSVTVPFDTFLPKFWTPEEDV
LVKKIKLGTQRRPWYRKIQGFSYKKSGLSSEESDGDVKPWLSVPTFSRAQSEPPPSHSHA
PEGLALSSHTSTLSSQTQPLTVAQQNAGLHKLEPPDFWPRPDPASGPRLIKCERRPLLGR
EHPNDPYNVSADILPDLENDDMFTRRTKTFHSSDDLAKLKYGNFLLPRRRSEADFMVVIQ
PRHEGEPVYPDIEKDDVVFRRAQQQINRPLSGAPDNYHPIPIPEAWALPPKLQAKLICDP
VEPRQHKSKPEIKHGAEQHLKTDDMLLRKLRALNTQGKKEGGAPSVSFSCSDEDVQKWQA
IREASRVRYWKRLMVESLLQKSSGIEGSKSVSDITDSETNLSNSTMELQKMRARIKENED
KWQDDLTRWKNKRRSVNSDIVKKKEEREQIEQNTSDTRKSKTFKKMQDERESREQSNYKD
SFNSITDDVFEEPVPRSRTLPVRSYTIDTPYTPMDKPSVPSIPSLREKEPVAGTLASDQT
DFHTKRDRSSPDIPLKMSNNIVESQTTTQSLLDDPVPAFSNSNSSLIKPTSAIKPTSVSK
PSSILISSELISSTKPVKNSSGLVSSLYKPNSMDIKQSGLDQVSASLPRSYQRSDSARLT
SVVTPRPFGTQSNRIASLPRAFTMDDSLKRTNGETDSLKKTTVSNRSAQYVKDEDISQES
PVQSSDEEEKPQSPVPPVNRVSSLPKSTSPLIPPNEVDYSEMRISLNQKPNSSRDFGFQS
DWDSTGVRVKTVVPGSPAEHGQVKVGDEILTVNGHRVANMNYNEWKNSMAEALQQGNLLM
DICRHGKNNWGRDLPSLPFKSHKTINLTSLDPLGPSEPYLSTSLDFTSQQTKDTVVKTVN
VSSQPGNNYGSNGINGGFHEDSETVNNKESESITMKNLKRRSEFFEQGGSDTAISNLPIP
SITTSTERYSWDPEEERRRHEKWQKEQEHLLQEKYKKDQEKLDEEWRKAQKELEKESFKK
HEEMLRLEEERRKREEQERLEEEKKKREEERKKREEERLRLEEERRKRQEQERFEEGKKK
REEEMKKREQERLLLEEERRRREEQERLEEQRRKREEEECFLREKERNRREEERRRLEEQ
KSFQEQDQSKVDYFGYTNVYPQLSYSHRSISKSTPELDEVEKTDIKAASGGLGEFSRDYK
KEPLSQSEVERQQILQEMKKKTSLNTDNSWIRQQTSASVTAKEPIDLPIRRGESLDNLDM
PRTSWCSSWSTSNSTSSIPDYSRPHSSLSGSLSHQSGHPGSATLQSSQSMSSLRQSWSPS
APTPEPEPRVPPRNRSVSGRKICSFCNTPLGKGAAMIIESLGLCFHLSCFKCFNCRSDLG
GSEAGAEVRIRSQQLYCNACYIRLKTGQPTAL
NT seq 4779 nt   +upstreamnt  +downstreamnt
atgatgtcagaatataaagaataccgccgttcacaggtcatagcacctaaggccaccacg
cagtacaatcagttcctgccatcaaaggaaaaacagtcaggctacgttccagcaccatta
cgcaagaaacgtgcagcgcgaaatgacgacaacagaagaagctgggctagccctatgtac
acagaagatgatggctcttttacaagtcccagtcatgagagtgcaggttcagacccttca
tctatcaccgggttgaaatcccagactactgctcacccgtctttggcctatgagtatgag
agcagtgattcggatgcagaccgaatggatcccgatgtggttatagatgaccttgctagc
cgtagatttcacagcctctcctctgtcgctccaaccaactttgccatacccatgagccag
ctggaggcagctgctataccttgtactaccaggtcacaggtggctgtcagtaatgtgtcc
cggcagacactgacccatctcagcagtcaatcacagcctcttgagaagacttacaggagg
cctgtatccactggtgtctgcatttatgatgactctgaagaagaggatgacgagtttggc
tatgctgatcctgttcaagatgatctgtatgcccgtaaagcaggtctgaggcctcaacca
tctgtaacagtgccttttgatacatttctgcccaagttctggacacctgaggaggatgta
ctcgtgaagaagatcaaactgggcacccagcgtcggccttggtacaggaagatccaaggt
ttcagctacaagaagtcaggattgtcttctgaagaatcagacggtgatgtcaaaccctgg
ctctctgtacctactttctctcgcgctcagtctgaaccccctccctctcactcccatgca
cctgaaggcctcgctctgtccagccacacttccacgctcagttctcaaacacaacccctc
acggttgctcagcagaatgcagggctgcataagttagaaccccctgatttttggcccaga
ccggatcctgcctctggccccagactcataaaatgtgaaaggcgtcctcttctagggcgt
gaacaccctaatgacccatacaacgtttctgctgacatcctgcctgatttagaaaatgat
gatatgtttacacgtcgtacaaaaaccttccactcaagtgatgacctggccaagttgaag
tatggtaacttcctgttgcctcgccgcagatcggaggccgacttcatggtggtaattcag
ccccgccatgagggtgaacccgtttatcctgacattgaaaaagatgatgtggtttttcga
agggctcaacagcaaatcaatcgccctctgtctggggcccctgataactaccaccctatt
cctattccagaggcatgggctttgccaccaaaacttcaggccaagttgatatgtgaccca
gttgaacccagacagcacaaatccaaaccagagattaaacatggagcagaacagcacctg
aaaacagatgatatgctacttaggaagctaagggctttaaatacccaaggaaagaaggaa
gggggagctcccagtgtttctttctcttgcagtgatgaagatgtgcagaaatggcaagct
atcagagaggccagccgtgtgcgatactggaagaggctgatggtggagagcctgctccag
aaaagctctggtattgaagggagcaaatcagtgagcgacatcaccgacagtgagaccaat
ctcagcaactcgacgatggagttgcagaagatgcgtgctcggattaaggaaaatgaggat
aagtggcaagatgatcttacaaggtggaagaataagcgcaggagtgtgaattctgacatt
gtgaagaagaaagaggagcgggaacagatcgagcaaaacacttcagacaccaggaaatca
aagaccttcaagaaaatgcaggatgagagagagagccgagagcaaagcaactacaaggac
agctttaactccatcactgatgatgtctttgaagaacctgtaccccgaagcagaactctg
ccagtacgtagctacaccattgacaccccttacacccccatggacaaaccttcagtaccc
tccataccatctctgagagaaaaggaacctgtcgctggcactctggcatcggatcagaca
gattttcataccaaacgtgatcgctccagcccagatatcccacttaaaatgagtaacaac
attgtggagagccaaacaacgacccaaagccttctggatgatccagttcctgcgttctcc
aacagcaactccagcctgattaagcccaccagtgcgatcaagcccaccagcgtcagtaaa
cccagcagcattctcatcagctcagagttgattagcagcactaagccagtcaaaaactcc
agtggtctcgttagctctttgtataaacccaattcaatggatataaagcagtctgggctg
gatcaagtttctgcctccctccccaggagctaccagagatcagatagcgcaagactcacc
tccgtagtcacgcccaggccattcggcacacagtccaaccgaatcgcctcccttcccaga
gcattcacgatggatgactctcttaagcgcacaaatggcgagacagacagcctcaagaag
acaacggtttccaaccgctctgctcaatatgtgaaagatgaagatatttcccaggaaagt
ccagtgcaaagcagtgacgaagaggagaaaccccagtctcctgtccctccagtcaacagg
gtgtcctccctgcccaaatctacatccccactcattcctcctaatgaggtggactacagt
gagatgaggatcagcctgaaccagaaacccaacagcagccgggactttggcttccagagc
gactgggactccactggggtccgtgtcaaaactgtagttccaggcagcccagcagagcac
ggtcaagtgaaggttggagacgagatccttacagtgaacggccacagggtggcaaacatg
aactataatgagtggaagaacagtatggcggaggccttgcagcagggtaatctgcttatg
gacatctgtagacatggcaagaataactggggcagagacctaccttcccttccatttaaa
agccataagaccatcaatctgaccagtctggatcctctaggtccctctgagccatacctc
agcaccagcctggatttcacatcccaacaaaccaaggatacggttgtgaaaactgtgaat
gtcagctctcagcctggaaataattatggttcgaatgggataaatggtggtttccatgag
gattcagagactgtgaataataaagaatctgaatccattactatgaaaaacttaaaaagg
aggtccgagttttttgaacaaggtggatccgatacagcaatatcaaatctgcctattccc
tccatcactacatccactgaacgctactcctgggacccagaagaagagcgcagacgacat
gagaagtggcagaaagagcaggagcacttgctgcaggagaagtacaaaaaggaccaagaa
aaacttgatgaggagtggagaaaggcacagaaagagcttgagaaggagagcttcaaaaaa
catgaggagatgctgcgtttagaggaagaaaggagaaaaagagaggaacaagagcgcctt
gaggaagagaagaaaaagagagaagaagagaggaaaaaaagagaagaggagagactgcgt
ttagaggaagagaggagaaaacgacaggaacaagagcgctttgaggaagggaagaagaag
agagaagaagagatgaaaaaaagagagcaggagagactgcttctagaggaagagaggagg
agaagggaagaacaagaacgccttgaggaacagaggaggaagagagaagaggaagagtgc
ttccttcgggaaaaagagaggaacagaagagaggaggagaggaggcgactagaagagcag
aagagttttcaggagcaagaccaaagtaaggtggactactttggctataccaatgtttac
cctcagttatcatactcacacagatccatttcgaaatctactccagaacttgatgaggtt
gaaaaaacagatattaaagcagcgagcggtggtctgggtgagttcagtagagactataag
aaagagcctctgtctcagtctgaggttgagaggcagcagatccttcaggaaatgaagaag
aagacttccttgaacacagacaacagctggattcgccagcagacctctgccagtgtcacc
gccaaagaaccgattgatctgcccatcaggagaggtgagtcacttgacaacctcgatatg
cctcgtacctcttggtgttcatcatggagcacatctaacagcacctcgtccataccagac
tacagccggcctcattcgtctctctctggctccttgtcgcaccagagtggacatccaggg
tctgccactctgcagtcatctcagtccatgagctccctcaggcagtcctggtccccatct
gcacctacaccagagccagagcctcgagttccaccgcggaataggtcagtgagtggcagg
aaaatatgttcgttctgtaatacaccactgggcaaaggagcagccatgatcatcgagtcc
ctggggctctgttttcatttgagttgtttcaagtgctttaactgcaggtctgatttggga
ggctcagaagcaggagcagaagtcagaatacgaagccaacagctctattgtaacgcctgc
tatatccgactcaaaactgggcagcccacagccttgtga

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (10)   
   RefSeq(pep) (10)   
DNA sequence (10)   
   RefSeq(nuc) (10)   
Protein domain (7)   
   Pfam (7)   
All databases (30)   

Download RDF
DBGET integrated database retrieval system