KEGG   Shewanella putrefaciens 200: Sput200_0337
Entry
Sput200_0337      CDS       T02015                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
shp  Shewanella putrefaciens 200
Pathway
shp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:shp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Sput200_0337
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:shp03019]
    Sput200_0337
   03400 DNA repair and recombination proteins [BR:shp03400]
    Sput200_0337
Enzymes [BR:shp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Sput200_0337
Messenger RNA biogenesis [BR:shp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Sput200_0337
DNA repair and recombination proteins [BR:shp03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Sput200_0337
SSDB
Motif
Pfam: RQC DEAD Helicase_C HRDC RecQ_Zn_bind ResIII CpeT zf-CXXC
Other DBs
NCBI-ProteinID: ADV52823
UniProt: E6XFL0
Position
355147..356970
AA seq 607 aa
MEKLVLDTHDDPLSQRLAQVFGYRDFRDGQREVIERVCGGQDCLVIMPTGGGKSLCYQLP
ALMMNGITIVVSPLISLMKDQVDSLLQTGVAAAYLNSSLPREQSAEVLRQLRHGELKLLY
VSPERLLTADFIERMQSLQLAMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPYVPMMAL
TATADQATRQSICERLGIDPYRLLSSFDRPNIRYTVAEKLNAANQLRHFLLQQNGSSGII
YCSSRRRVDEVADRLCLQGFNAKAYHAGMTQEDRGAVQDSFLKDQIDIVVATVAFGMGIN
KSNVRFVVHYDIPKSIEAYYQETGRAGRDGLDAEAFMLFDPADIGRVRHLIEQSEPGPQQ
QVEFHKLNTMAAFAEAQTCRRQVLLHYFDESALEPCGNCDICLDPPKRYNGTEDAQKVLS
CIYRLGQRFGINHLIEVLRGSKGAPIVDRGHDKLTTWGIGKDKSHEYWLSVIRQLIHLGL
ASQDVTRGSSITLNPSARPVLKGEVALMLAEPRIQLTTTKRKASQSKAPLNYDRKLFARL
KLLRRTIAEQQDVPPYLVFNDATLAEMAAMMPTSAGEMLAVNGVGERKLSRFGDDFLDEI
AAYLAGE
NT seq 1824 nt   +upstreamnt  +downstreamnt
atggaaaagctcgtactcgacacgcatgatgatccgctctcgcaacgcttagcacaggtg
tttggttaccgtgactttagggacggtcagcgggaggtgatagaacgtgtctgcggcggg
caagattgtttagtgatcatgccaacgggcggcggtaagagtctgtgttatcagttaccc
gctttgatgatgaatggcatcactattgtcgtctccccattgatttctttgatgaaagat
caagtcgatagcttattgcaaaccggtgttgctgcggcttatctgaattcttctttgccg
cgagagcagagtgccgaagtattaaggcagctacgccacggtgagttaaaactactttat
gtgtcacctgagcgcttattaaccgctgattttattgagcgtatgcagtcgctgcagctg
gcgatgtttgccatcgacgaggcgcactgtattagtcagtggggccatgattttcgtcct
gaatatgcagcactcggccagttaaaacaactcttcccctatgtgcctatgatggcgctg
actgcaacagcagatcaggcaacgcgccaaagtatttgtgagcgtttaggtattgatcct
taccgactattatcgagttttgataggccgaatattcgctatacagtggccgaaaaactc
aatgccgctaaccagttacgacattttctactacaacaaaatggtagcagtgggattatt
tattgcagcagtcgtcgccgtgttgatgaggtggccgatcgtttatgcctgcaaggtttt
aatgccaaggcctatcatgcggggatgacgcaggaagaccgtggtgcagtacaggacagt
ttccttaaagatcaaattgatatcgtcgttgcgaccgtggcgtttggtatggggatcaat
aagtcgaacgtgcgctttgtggtgcattacgatatcccgaaaagcatcgaagcctattac
caggaaacgggccgagcaggtcgtgatgggctcgatgctgaggcttttatgctatttgat
ccggccgatattggccgagtgcggcatttgattgagcagtcagagccggggccgcagcaa
caggtcgaattccacaaacttaatactatggcggcctttgctgaggcgcaaacctgccgc
cgccaagtgctgctgcattactttgatgaaagtgcattagaaccctgtggtaactgcgat
atttgcctcgatccgcctaagcgctataacggcaccgaagatgcgcaaaaggtgctgtcg
tgtatttatcgactaggacagcgatttggtatcaatcacttaattgaagtgttacgcggt
tcgaaaggcgcaccgatagtcgatcgagggcatgacaaactcacgacttgggggattggt
aaagataaaagccatgaatattggctgagtgtgatccgtcaactcattcatctgggatta
gcaagccaagatgtgactcgtggctcctctattaccttaaacccatcggcacggcctgtg
ctcaaaggggaagtggcgttaatgctcgccgaaccgcgtattcagttaacaaccacaaaa
cgtaaggcgagtcagtctaaagcaccgcttaattatgaccgtaagttatttgctcggcta
aaattgttgcgtagaaccattgccgaacagcaggacgtgccgccatatttagtgtttaac
gatgcgacactcgcagaaatggcggccatgatgccaacgagtgcgggtgaaatgctcgcg
gttaacggggttggcgagcgtaaactcagccgttttggtgacgatttccttgatgagatt
gcagcttatttagctggagagtga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (11)   

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