KEGG   Sesamum indicum (sesame): 105179849
Entry
105179849         CDS       T04135                                 
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
  KO
K15172  transcription elongation factor SPT5
Organism
sind  Sesamum indicum (sesame)
Pathway
sind03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:sind00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    105179849
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sind03021]
    105179849
   03019 Messenger RNA biogenesis [BR:sind03019]
    105179849
Transcription machinery [BR:sind03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     105179849
  RNA polymerase I system
     105179849
Messenger RNA biogenesis [BR:sind03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     105179849
SSDB
Motif
Pfam: KOW1_SPT5 KOW6_SPT51-2 Spt5-NGN KOW2_Spt5 KOW7_SPT5 KOW4_SPT5 KOW KOWx_SPT5 KOW5_SPT5 Spt5_N GPKOW_C KOW6_SPT5 DUF4438
Other DBs
NCBI-GeneID: 105179849
NCBI-ProteinID: XP_011101790
UniProt: A0A6I9UQ56
Position
LG2:complement(4561623..4569762)
AA seq 1039 aa
MPRRRDDYEDDDVEQDEEEEYDAVDEEDEEADDYDDGGKTKRKRTRSDFIDDYAEEDDEE
EEDDDEEYGGGGRGGKRHRKAASEFFDEEAAVDSDEEEEEEEGEDDFIDTGADIPDEDDR
RIHHRPLLPREDEQEDVEEMERRIQERYAKSLNVEYDEEATDVEQQALLPSVRDPKLWMV
KCAIGREREVAVCLMQKFIDRGPELQIRSAIALDHLKNYIYIEADKEAHVREAVKGMRNI
YPTKIMLVPIKEMTDVLSVESKAIDISRDTWVRMKIGTYKGDLAKVVDVDNVRQRATVKL
IPRIDLQALANKLEGREVQKKKAFTPPARFMNIDEARELHIRVERRRDPATGDYYEKIEG
MMFKDGFLYKNVSLKSLSTQNVQPTFDELEKFRQPGETGDGDMSSLSTLFANRKKGHFMK
GDRVIVVKGDLRNLKGWVEKVEEDTVHIKPNEKGLPKTLAISDKELCKYFEPGNHVKVVS
GATEGATGMVVSVEGHVVNIVSDTTKELLRVFADNVVESSEVTSGVTRIGDYELHDLVLL
DDNSFGVIIRVESEAFQVLKGVPERPDVALVRLREIKYKIDKKIFAKDRYKNTLSAKDVV
KILEGPCRGKQGPVEHIYKGILFIYDRHHLEHAGFICVKSESCMMVGGSRANGDRNGNAL
TSRFAHLRTPPRVPQSPMRSARGGSMNFGGRHGGRSGGGRGHDSLIGASVKIRLGHYKGC
KGRVVDVKGSMVRVELESQMKVVAVDRSYISDNVNVSTPFRETSRYGMGSETPMHPSRTP
LHPYMTPMRDSGVTPALDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPSS
PRSRAYEAPTPGSGWTSTPSGNYNDAGTPRDSGSAYANAPSPYLPSTPGGQPPMTPSSAY
LPGTPGGQPMTPGSGGLDMMSPVVGSDNEGPWFLPDILVNVRRSGEDSSLGVIREVLPDG
SCKVALGSSGNGEMVTALPSEIEIVAPRKAEKIKIMGGAHRGATGKLIGIDGTDGIVKVD
DTLDVKILDMVILAKLVQT
NT seq 3120 nt   +upstreamnt  +downstreamnt
atgccgcggcggagagacgactacgaggacgacgacgttgagcaggacgaagaggaggag
tacgacgccgttgatgaggaggatgaggaagcggatgattatgacgacggcgggaagacc
aaacgcaagaggactagatcggattttatagatgattatgcggaggaggacgacgaggaa
gaggaggacgatgatgaggagtatggaggaggtggccgcggggggaaacggcataggaag
gccgcttcggagttttttgatgaggaggcggcggtggatagcgacgaggaagaggaggaa
gaggaaggggaagatgatttcattgacactggggctgatatacctgatgaggacgatcgg
cgaattcatcatcgtccattgcttccgcgtgaggatgagcaagaggatgtagaagaaatg
gagaggaggattcaggagagatatgcaaagagccttaatgtggagtatgatgaggaggca
acagatgttgaacagcaggctctactgccgtctgttagggatccaaaattatggatggtc
aaatgtgcgattggtcgtgaaagggaggtggctgtctgccttatgcagaagttcattgac
agaggacctgaattgcaaattagatctgcaattgcacttgatcacctcaaaaactatatc
tatatagaggctgacaaagaagcccatgtgagggaggctgttaagggcatgcgcaatata
tatccaactaaaataatgcttgtccctatcaaggagatgacagacgttctgtcagttgaa
agcaaagcaattgatatttctagggatacctgggttagaatgaaaataggtacatataaa
ggggatcttgctaaggttgtggatgttgacaatgtacggcagagagcaacagtgaaatta
attccaaggattgacttgcaagcactggctaataagttggaagggagggaagttcagaag
aaaaaggcattcacccctcctgccagatttatgaatattgatgaagctagagagctgcat
attcgtgtagagcgcagaagagatccagctacaggtgattattatgaaaagattgaaggg
atgatgttcaaggatggtttcttgtacaaaaatgtatcactgaagtcactcagcacccag
aatgtgcaaccaacctttgatgaactcgagaaatttaggcaacctggtgaaaccggggat
ggtgacatgtcaagtttgtctacgctctttgcaaacagaaagaaaggtcatttcatgaag
ggtgatagggtgatagttgttaagggagatcttcgaaacttgaaaggatgggtggaaaag
gttgaggaagatacagtgcatataaaaccaaatgaaaaaggccttcctaaaacacttgct
atcagtgacaaagagctttgcaagtactttgaaccaggaaatcatgtgaaggttgtatct
ggtgctacagaaggtgcaactggtatggttgtttcagttgaaggtcatgtggtgaatata
gtttcagacacaacgaaggaacttcttcgtgtctttgcagacaatgttgtggaaagctct
gaagtaacatccggtgtcacacggattggtgactatgagcttcatgaccttgtgctactc
gatgataatagttttggtgtgattatacgtgtggagagtgaagcttttcaggtcctgaag
ggtgttccagagagacctgatgttgcgcttgtgaggttaagagagatcaaatacaaaatt
gataagaagatttttgccaaagatcgatacaagaacacattatccgcgaaagatgttgta
aaaatccttgagggtccgtgtaggggaaagcaaggtcctgttgaacatatctataaagga
attctgtttatttatgatcggcatcaccttgagcatgctggtttcatttgcgtcaaatct
gagtcttgcatgatggttggtggatcacgtgcaaatggtgataggaatggtaatgcattg
acgtcaagattcgcccatctcagaactccaccgcgtgttccccagtctcccatgagatca
gctagaggtggttcaatgaattttggaggaagacatggaggaaggtcgggaggtggaagg
ggtcatgattctttaattggggcttccgtcaaaattcgtctgggccattataagggatgc
aaaggccgtgttgttgatgtcaaaggttcgatggtccgggttgaattagagtcgcaaatg
aaggttgtcgcagttgatcgcagttatatctcagacaacgtcaatgtatctacgccattc
agggaaacatccagatatggtatgggaagtgagacgcctatgcatccttctcgaactcca
cttcatccatatatgactcctatgagagattctggagtaacccctgctcttgatggtatg
aggacgcctatgcgtgaccgagcatggaatccttacacgccaatgagtccaccaagggac
aattgggaagatgggaaccctggttcttggggaactagtccgcagtatcagccatcaagt
cctcgttcacgagcgtatgaagcgccgacacctggttctggttggacaagtactcctagt
ggcaattacaatgatgccggcacaccaagagatagcggttctgcctatgcaaatgctccg
agtccgtacttgccttctacgcctggtgggcagccgcctatgaccccaagttccgcatat
ttgcctggtacacctggtgggcaaccaatgacacctggaagtggtggtttggatatgatg
tctcctgtagtaggttcagacaatgaaggcccttggttcttgcctgatattttggtcaat
gttcgtaggtctggtgaagacagttctttgggagttataagagaagtgcttccggacggc
tcatgtaaggtagctcttggatcaagtggaaacggagaaatggtcactgcccttcccagt
gaaattgagatagtggctcctaggaaagcagagaagattaagatcatgggtggtgcgcac
cgtggggccactgggaaacttattggtattgatggaactgatggcattgtgaaagtcgat
gatacactggatgttaaaatcttagacatggttatattggcaaaactagttcaaacgtga

  All links  
Gene (29)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (13)   
   Pfam (13)   
All databases (49)   

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