KEGG   Streptomyces lincolnensis: SLINC_3858
Entry
SLINC_3858        CDS       T04801                                 
Name
(GenBank) 60 kDa chaperonin
  KO
K04077  chaperonin GroEL [EC:5.6.1.7]
Organism
sls  Streptomyces lincolnensis
Pathway
sls03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sls00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SLINC_3858
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sls03019]
    SLINC_3858
   03110 Chaperones and folding catalysts [BR:sls03110]
    SLINC_3858
   03029 Mitochondrial biogenesis [BR:sls03029]
    SLINC_3858
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sls04147]
    SLINC_3858
Enzymes [BR:sls01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.1  Enzymes altering polypeptide conformation or assembly
    5.6.1.7  chaperonin ATPase
     SLINC_3858
Messenger RNA biogenesis [BR:sls03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     SLINC_3858
Chaperones and folding catalysts [BR:sls03110]
 Heat shock proteins
  HSP60 / Chaperonin
   SLINC_3858
Mitochondrial biogenesis [BR:sls03029]
 Mitochondrial protein import machinery
  Matrix
   Other matrix factors
    SLINC_3858
Exosome [BR:sls04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   SLINC_3858
  Exosomal proteins of other body fluids (saliva and urine)
   SLINC_3858
  Exosomal proteins of breast cancer cells
   SLINC_3858
  Exosomal proteins of colorectal cancer cells
   SLINC_3858
  Exosomal proteins of bladder cancer cells
   SLINC_3858
SSDB
Motif
Pfam: Cpn60_TCP1 CbiA DUF4844
Other DBs
NCBI-ProteinID: ANS66082
UniProt: A0A1B1MCF3
Position
complement(4602489..4604114)
AA seq 541 aa
MAKIIAFDEEARRGLERGMNQLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIE
LEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPMALKRGIE
KAVEAVSGALLEQAKDVETKEQIASTASISAADTQIGELIAEAMDKVGKEGVITVEESQT
FGLELELTEGMRFDKGYISAYFATDMERMEASLDDPYILIANSKIGSVKDLLPLLEKVMQ
SGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLNDIAILTGGEVIS
EEVGLKLENTSIDLLGRARKVVITKDETTIVDGAGSSEQVQGRVNQIRAEIENSDSDYDR
EKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVALIQA
SSVFEKLDLEGDELTGANAVKLALEAPLKQIAVNGGLEGGVIVEKVRNLPVGHGLNAATG
EYVDMIAEGIIDPAKVTRSALQNAASIAALFLTTEAVIADKPEKAGAAPAGGGMPGGDMD
F
NT seq 1626 nt   +upstreamnt  +downstreamnt
atggccaagatcatcgcgttcgacgaggaggcacggcgcggtctcgagcgcgggatgaac
cagctcgccgacgccgtcaaggtcacccttggtcccaagggtcgcaacgtcgtcctcgag
aagaagtggggcgcccccacgatcaccaacgatggtgtttccatcgccaaggagatcgag
ctcgaggacccgtacgagaagatcggcgccgagctggtcaaggaagtcgccaagaagacg
gacgacgtcgccggtgacggaacgaccacggcgaccgtgctcgcccaggcgctcgtgcgc
gagggtctgcgcaacgtagccgccggcgccaacccgatggccctcaagcgcggtatcgag
aaggccgtcgaggccgtctccggtgccctccttgagcaggccaaggacgtcgagaccaag
gagcagatcgcctccacggcctccatctccgccgccgacacccagatcggcgagctcatc
gccgaggcgatggacaaggtcggcaaggaaggcgtcatcaccgtcgaggagtcccagacc
ttcggtctggagctggagctcaccgagggtatgcgcttcgacaagggctacatctcggcg
tacttcgccaccgacatggagcggatggaggcgtcgctcgacgacccctacatcctcatc
gccaactccaagatcggttccgtcaaggacctgctcccgctcctggagaaggtcatgcag
tcgggcaagccgctgctgatcatcgccgaggacgtcgagggcgaggccctgtcgaccctg
gtcgtcaacaagatccgcggcaccttcaagtccgtcgccgtcaaggccccgggcttcggt
gaccgccgcaaggcgatgctgaacgacatcgccatcctcaccggcggcgaggtcatctcc
gaggaggtcggcctcaagctggagaacacctccatcgacctgctgggccgtgcccgcaag
gtcgtcatcaccaaggacgagaccaccatcgtcgacggtgccggctcctccgagcaggtt
cagggccgggtcaaccagatccgcgccgagatcgagaacagcgactccgactacgaccgc
gagaagctccaggagcgcctggcgaagctcgcgggcggcgtggccgtcatcaaggccggt
gccgcgaccgaggtcgagctcaaggagcgcaagcaccgcatcgaggacgccgttcgcaac
gcgaaggcggccgtcgaggagggcatcgtcgccggtggtggcgtggccctcatccaggcc
tcctcggtcttcgagaagctggacctggagggtgacgagctgaccggcgccaacgccgtg
aagctcgccctggaggccccgctcaagcagatcgccgtcaacggtggtctcgagggtggc
gtcatcgtcgagaaggtgcgcaaccttcccgtcggccacggcctgaacgccgcgaccggt
gagtacgtcgacatgatcgccgaaggcatcatcgacccggcgaaggtcacgcgctctgct
ctgcagaacgccgcctccatcgccgcgctgttcctcaccaccgaggccgtcatcgccgac
aagccggagaaggcgggcgctgccccggccggcggcggcatgccgggcggtgacatggac
ttctga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (6)   

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