KEGG   Solanum lycopersicum (tomato): 101247241
Entry
101247241         CDS       T02665                                 
Name
(RefSeq) nuclear poly(A) polymerase 4-like isoform X3
  KO
K14376  poly(A) polymerase [EC:2.7.7.19]
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    101247241
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sly03019]
    101247241
Enzymes [BR:sly01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     101247241
Messenger RNA biogenesis [BR:sly03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Poly(A) addition factors
     101247241
SSDB
Motif
Pfam: PAP_NTPase PAP_central PAP_RNA-bind NTP_transf_2 MTPAP-like_central HROB Nrap_D2 Dro
Other DBs
NCBI-GeneID: 101247241
NCBI-ProteinID: XP_004245142
UniProt: A0A3Q7HQV8
Position
8:56037635..56050142
AA seq 788 aa
MMGSESLTPPPVVAAAAEAAPPPKKQGVTKPLSLAGPTEADLQRNEALENFLKESELYES
EEETARREEVLHQIDQIVKSWVKQLTHQRGYTDQMVEDANAMIFTFGSYRLGVHGPGADI
DTLCVGPSYVNRDEDFFIILHDILAEKEEVSELQPVPDAHVPVMKFKFQGISIDLLYASI
SLLVVPEDLDISDQSVLHNVDEPTVRSLNGCRVADQILKLVPNAEHFRTTLRCLKFWAKR
RGVYSNVTGFLGGVNWALLVARICQFYPNALPSMLVSRFFRVYTQWRWPNPVMLCPIEED
ELGFLVWDPRKNPKDRTHHMPIITPAYPCMNSSYNVSPSTLRVMMDQFQFGNKICEEIEL
NKAQWGALFKHYLFFEVYKNYLQVDIVAADNDDLLAWKGWVESRLRQLTLKIERDTNGML
QCHPYPNEFVDLSKPCPHCAFFTGLQRKQGVKVQEGQQFDIRGTVDEFKQDVSMYAYWRP
GMDIYVSHVRRKQIPPFVFPDGYKRPRQPRNTSHSTPEKVAKDCMSPEERQPKRKQETET
VHVNLGKPGKRASISPQRIGSVSPLGSSCRSDGSSQIIISDESQRELESSCLMDSSDDRS
LHRILRSRSDSSPSDSSICTPDSLNYTTLRGSTLLGVSREVELDSSNTKSLPNKEVLSPC
EDICSRDVQTFQVLQNDEKGEILGSLHQDIVGQLNEPCIQTRCAESLERVTVSNSNTQNL
TCEGDISLADRISQLGDGCLSGNGELGNGLAEMSQPNLSLTRAMEPQDGTSSEAVQEAAI
RLSLESTA
NT seq 2367 nt   +upstreamnt  +downstreamnt
atgatgggttccgagagcttaacgccgccgccggtggtggcggcggcggcagaggccgcg
ccacccccgaagaagcagggagttacgaagcctttgtctcttgctgggcccaccgaggca
gatcttcaaagaaatgaagcattagaaaattttttgaaggaatcagagttgtatgagagt
gaggaagagacagcaaggagagaagaggtgctgcatcagattgatcagattgtaaaatca
tgggtgaaacagttgactcaccagagaggctacactgatcaaatggtggaggatgcaaat
gctatgatattcacttttggttcttatcggttaggagttcatggacctggagctgacata
gataccttgtgtgttggtccctcttatgtcaatcgtgatgaggatttttttatcattctg
catgatattttggctgaaaaggaagaagtcagtgaactccaaccagttcctgatgctcat
gtcccagttatgaaattcaaatttcaaggaatatctattgatctcctttatgcaagtata
tctctcttagttgtccctgaagatttagatatctcagatcaatctgtactccacaatgtg
gatgaaccaactgttcgaagtctcaatgggtgccgggttgctgaccaaatattaaaacta
gttcctaatgctgagcacttccgcacaactcttagatgtctaaagttttgggcaaaaagg
cgcggtgtttattccaatgttaccggattccttggcggtgtgaattgggctctattggtt
gctcgcatttgccaattttatcctaatgcactccccagtatgcttgtttctaggttcttc
agagtttatacacaatggcgttggccaaatccagtgatgctatgcccaatagaagaggac
gagctgggttttcttgtttgggatcctcgcaagaatccaaaagaccgaacccatcatatg
ccaattattactcctgcttacccttgcatgaactctagctacaatgtttccccaagtact
cttcgagtaatgatggaccaatttcagtttggtaacaagatttgtgaggagatagagttg
aataaagcacagtggggcgcgctttttaagcattatcttttctttgaggtctacaaaaac
tatctacaggttgacattgtagcagcagataatgatgatttgctagcttggaaaggctgg
gtggaatcccggcttaggcaactgacactaaagatagagcgggacacgaacgggatgttg
cagtgccatccgtatcctaatgaatttgtagacttatctaagccatgtccgcattgtgct
ttttttacgggcttgcagaggaaacagggtgtcaaagtgcaagaagggcaacaatttgat
attcgtggcacagtcgatgagtttaagcaagatgtaagcatgtacgcttactggagacca
ggcatggatatctatgtatctcatgttcggaggaagcaaattcctccatttgtctttcca
gatgggtataagagaccaaggcaacctaggaatacaagtcatagtactcctgagaaagtt
gctaaagactgcatgtctcctgaagaacggcagccaaagaggaaacaggagactgaaaca
gtccatgtaaatttgggcaaaccagggaaacgtgcttctatcagtccgcagaggatcgga
tctgtttctcctctaggtagttcttgcaggtctgacggatcatcacagataatcatttct
gatgagtcacagagggagcttgagagttcttgcctaatggacagttctgatgatagatca
ttacataggatattgcgcagcagaagtgattcctctccgagtgacagttccatttgtaca
cctgatagtttaaactatacaacgttgaggggttccaccttattaggagtttccagagaa
gttgaattagatagttccaacacaaaatccctcccaaacaaggaagtgctcagtccatgt
gaagacatatgcagtagagacgtccagacttttcaagtcttgcagaatgatgagaagggg
gagattttgggatcacttcatcaggatattgttgggcagctcaacgaaccatgcattcag
actcgttgtgcagaaagtctcgaaagagtgactgtatcaaattccaacacccagaacctc
acttgcgagggtgatataagcttggctgatcggatttcacaacttggggatggatgtcta
agtgggaatggagaactgggtaatggcttggcagagatgtcacagccaaacctttctctc
acaagggcaatggaaccacaggatgggacaagctcagaggctgtgcaggaggctgcaata
aggttgagtctggaatcaacagcttga

  All links  
Gene (17)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (8)   
   UniProt (1)   
   RefSeq(pep) (7)   
DNA sequence (7)   
   RefSeq(nuc) (7)   
Protein domain (8)   
   Pfam (8)   
All databases (40)   

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