KEGG   Solanum lycopersicum (tomato): 101268462
Entry
101268462         CDS       T02665                                 
Name
(RefSeq) nuclear poly(A) polymerase 4 isoform X1
  KO
K14376  poly(A) polymerase [EC:2.7.7.19]
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    101268462
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sly03019]
    101268462
Enzymes [BR:sly01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     101268462
Messenger RNA biogenesis [BR:sly03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Poly(A) addition factors
     101268462
SSDB
Motif
Pfam: PAP_NTPase PAP_central PAP_RNA-bind NTP_transf_2 MTPAP-like_central DPC4_C Tmemb_9
Other DBs
NCBI-GeneID: 101268462
NCBI-ProteinID: XP_010314828
Position
12:67205419..67212354
AA seq 610 aa
MVSSESLSESVAPPPKKYGVTKPLSLAGPTETDLQRNAELEKFLRESELYESEEETARRE
EVLRRLDQIVKQWVKQLTRQRGYIDQMVEDANAIIVTFGSYRLGVHGPGADLDTLCVGPC
YVNREEDFFILLHDILAEMEEVCELQPVPDAHVPVMKFKFQGISIDLLYASITLLVIPED
LDISDQSVLCNVDGPTVRSLNGCRVADRILKLVPNAKMSEVLGQKTLCLFQCEFLVPRTI
SVVTGFLGGVNWALLVARICQFYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGF
LVWDPRKNPKDRTHHMPIITPAYPCMNSSYNVSPSTLRVMMDQFQIGNKICEDVELNKSQ
WPALFEHYFFFEAYKNYLQVEIVAADNDDLLAWKGWVESRLRQLTLKIERDTNGTLQCHP
YPNEFADMSKPCPHCVFFMGLQRQKGVKVQEGQRFDIRGTVDEFKQEVNMYSYWRPGMDI
YISHVPRREIPAYVFPDGYKRPRQSRNTTQHTPEKDAKGCMSSEGRRSKRKQETHTVDVE
SDKLPKRASISPQNIGSVSPASVSSRSGGSSQIIIPEESLQEVKTAGLQNQSSDDKSTED
TGEQKPCISE
NT seq 1833 nt   +upstreamnt  +downstreamnt
atggtgagttcggagagcttaagtgagtctgttgcaccaccaccaaagaaatatggtgtc
acaaagccattatctcttgctggaccaactgagacagatcttcaaagaaatgcagaactg
gaaaagtttttgagggaatcagaattgtatgagagtgaggaagagactgcaaggagagaa
gaagtactgcggcgacttgaccagattgtaaaacaatgggtgaaacaattgactcgccag
agaggctacatagatcaaatggttgaggatgcaaatgctatcatagtcacctttggctct
tatcgtctaggggttcatggaccaggagctgacctggacacattgtgtgttggtccctgc
tatgtcaatcgagaagaagatttctttatccttcttcatgatattttagctgaaatggaa
gaagtttgtgaacttcaaccagttcctgatgctcatgtccctgttatgaaattcaaattt
caaggaatttcaattgatcttctttatgcaagtataactctcttggttattcctgaagat
ttggatatctcagaccaatctgtactctgtaatgtggatggaccaactgttcgaagtcta
aatggttgtcgagttgctgatcgaatactgaaactagttcccaatgctaagatgtctgaa
gttctgggccaaaagacgttgtgtttattccaatgtgagttcttagtccctcgaaccatc
tcagtggttactggatttcttggtggggtgaattgggctcttttggttgctcgcatttgc
cagttttacccaaatgcaatccctagtatgcttgtttctaggttcttccgtgtttataca
caatggcgttggccaaatcctgtgatgttatgcccaatagaagaggatgaacttgggttt
cttgtttgggatccgcgcaagaatcctaaagacagaactcatcatatgccaatcatcact
cctgcctacccttgcatgaactctagctataacgtctcaccaagcactcttcgagtaatg
atggaccaatttcagattggtaacaagatttgtgaggatgtggagttgaataaatcacag
tggcctgctctttttgagcattattttttctttgaggcgtacaaaaactatctccaggtt
gaaatcgtagcagcagataatgatgatttgctagcttggaaaggctgggtggaatcacgg
cttcgacaactcacgctaaagatagagcgggacaccaatgggacgttgcagtgccatcct
tatcctaatgaatttgcggacatgtcaaagccatgcccgcattgtgtttttttcatgggt
ttgcagaggcaaaagggtgtcaaagtacaagaaggtcaacggtttgatatccgcggaaca
gtcgatgagtttaagcaagaggtaaacatgtactcttattggagaccgggcatggatatc
tatatctcgcatgttcctaggagggaaattcctgcttatgtctttcctgatgggtataag
agaccacgtcaatctagaaatacaactcagcatactcccgagaaagatgccaaaggttgc
atgtcttctgaaggaaggcgttcaaagaggaagcaggaaacccatacagttgatgtagag
tccgacaaactgccgaaacgtgcttctattagtcctcaaaatataggatctgtttcgccc
gcaagtgtttctagtcggtcaggcggatcatcacagataatcattcccgaggagtcactt
caggaggttaagactgctggccttcaaaaccaaagttctgatgataaatcaacagaggat
actggggagcagaaaccatgcatttctgagtga

  All links  
Gene (17)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (12)   
   RefSeq(pep) (12)   
DNA sequence (14)   
   RefSeq(nuc) (12)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (50)   

Download RDF
DBGET integrated database retrieval system