KEGG   Sphingorhabdus sp. YGSMI21: CHN51_05980
Entry
CHN51_05980       CDS       T05308                                 
Name
(GenBank) hypothetical protein
  KO
K10914  CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
Organism
sphy  Sphingorhabdus sp. YGSMI21
Pathway
sphy02020  Two-component system
sphy02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:sphy00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CHN51_05980
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    CHN51_05980
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:sphy03000]
    CHN51_05980
Transcription factors [BR:sphy03000]
 Prokaryotic type
  Helix-turn-helix
   CRP/FNR family
    CHN51_05980
SSDB
Motif
Pfam: cNMP_binding HTH_Crp_2 HVO_A0261_N HTH_Cmi2_C MarR
Other DBs
NCBI-ProteinID: ATW03143
Position
complement(1229041..1229706)
AA seq 221 aa
MEKMMTTSDRIAALAAFFSCSPEEAAKVDAATRLVHYRHKDILAHQGDLGAKLWIVLEGR
AQLQIIGMDGQTKLLAAHGPGELFGAFPHERIVISDIVVQNRLSVLEIPTAKMTALLREE
ARIGSGLSRILGRQYNAVLDRMAARITLTANGRVYAELLHEAGEEGEITPPPVIAALALS
AQTTRETGSRAINALERRGIIRRDEERLEILSRGLLEELVV
NT seq 666 nt   +upstreamnt  +downstreamnt
atggagaagatgatgaccaccagcgaccgtatcgccgcccttgccgcgtttttttcctgt
tcgccggaagaagccgcgaaggtcgatgcggcgacccggctggtccattatcgccacaag
gacattctggcccatcagggcgatctcggggccaagctgtggatcgtgctcgaaggccgg
gcgcagctgcagatcattggcatggatggccagaccaaattgctcgctgcccacggccct
ggtgaattattcggcgccttcccgcatgagcggatcgtgatttccgatatcgtggtgcag
aaccggctctcggtcctcgaaatccccaccgcaaaaatgaccgccctgttgcgcgaggaa
gcccgtatcggcagcggcctgtcaagaatattggggcggcaatataatgcggtgctcgac
cggatggcagcgcgcataaccctgaccgccaatggccgcgtctatgccgaattgctgcac
gaagccggggaggaaggtgaaataacaccgccgccggtgatcgcggcgctggccttgtcc
gcccagaccacgcgcgaaaccggatcgcgggcgatcaacgcgctggaacggcgcgggatc
atccggcgcgacgaggagcggctggaaatcctgtcgcgcgggctgctcgaggaactggtg
gtctga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (8)   

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