KEGG   Scomber scombrus (Atlantic mackerel): 133978140
Entry
133978140         CDS       T10651                                 
Symbol
tubb1
Name
(RefSeq) tubulin beta-1 chain
  KO
K07375  tubulin beta
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Pathway
ssco04145  Phagocytosis
ssco04517  IgSF CAM signaling
ssco04540  Gap junction
ssco04814  Motor proteins
ssco05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:ssco00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04517 IgSF CAM signaling
    133978140 (tubb1)
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagocytosis
    133978140 (tubb1)
  09144 Cellular community - eukaryotes
   04540 Gap junction
    133978140 (tubb1)
  09142 Cell motility
   04814 Motor proteins
    133978140 (tubb1)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    133978140 (tubb1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ssco03036]
    133978140 (tubb1)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:ssco04812]
    133978140 (tubb1)
   04147 Exosome [BR:ssco04147]
    133978140 (tubb1)
Chromosome and associated proteins [BR:ssco03036]
 Eukaryotic type
  Centrosome formation proteins
   Microtubules and associated factors
    Other tubulins
     133978140 (tubb1)
Cytoskeleton proteins [BR:ssco04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulins
    133978140 (tubb1)
Exosome [BR:ssco04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   133978140 (tubb1)
  Exosomal proteins of colorectal cancer cells
   133978140 (tubb1)
  Exosomal proteins of bladder cancer cells
   133978140 (tubb1)
SSDB
Motif
Pfam: Tubulin Tubulin_C Misat_Tub_SegII Tubulin_3 Tubulin_2 ATG19
Other DBs
NCBI-GeneID: 133978140
NCBI-ProteinID: XP_062272483
Position
3:complement(23192286..23196091)
AA seq 467 aa
MREIVHLQIGQCGNQIGSKFWEVISEEHGLDHTGIYEGDCHLQLERVNVYFNEAHGGKYV
PRALLVDLEPGTMDSVRGSRIGTLFRPDNFIHGNSGAGNNWAKGHYTEGAELVDQVIDRV
RNECESCDCLQGFQLVHSLGGGTGSGMGTLLINKIREEYPDRIMNTFSIMPSPKVSDTVV
EPYNATLSVHQLLENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVCMTMSGVTTSL
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYNALTVPELTQQMFDSRNMM
TACDPRRGRYLTVAGVFRGKMSTKEVDEQMLAIQKRNSNYFVDWIPHNVKVAVCDIPPRG
LKMSSTFIGNNTAIQEIFRRVGEQFAMMFRRKAFLHWYTGEGMDEMEFTEAESNLNDLVS
EYQQYQDATAHAESEGEEEEEVAEKVQSRMEVRLETVTETSQETIDE
NT seq 1404 nt   +upstreamnt  +downstreamnt
atgcgtgaaattgtacatcttcaaattggacaatgtggcaaccagatcggctcaaagttt
tgggaggtgatcagtgaagaacatgggctcgatcataccggtatctatgagggagactgc
cacctccaactggagagggtcaatgtctacttcaatgaggcacatggtggtaaatatgtg
cccagggccctgctggttgacctggagcctggcaccatggacagtgtaagagggagccgc
atcgggaccctttttaggccagacaacttcatccatggaaactcaggagctgggaataac
tgggcgaagggtcactacaccgagggagcggagctggttgaccaggtgattgacagagtc
aggaacgagtgtgaaagctgtgattgccttcagggtttccagctggttcactcactgggg
ggtggcactggctctggcatgggaaccctcctcatcaacaagatccgagaagagtacccc
gaccgtatcatgaacaccttcagcatcatgccttcccctaaagtctcggacacagtggtg
gagccctacaacgccaccttgtcagtccaccaactcctggagaacacagatgagacctac
tgcatcgacaatgaggccctgtacgacatctgcttccgcaccctgaaactgaccacaccg
acttatggggacctgaaccacttggtctgcatgaccatgagtggggtcacgacctccttg
agattccccggacagctcaacgcagacctgaggaagctggctgtcaacatggtgcctttc
cctcgcctccatttcttcatgccaggcttcgcccccctgacagcgcggggcagccaacaa
tacaatgccctcaccgtgcctgaactcacccagcagatgttcgattcccgcaacatgatg
acagcttgcgaccccagacgtgggcgctacctcacggtggctggcgtcttccgtggcaag
atgtccaccaaggaggtagatgagcagatgcttgcaatccagaagagaaacagcaactac
tttgtggactggatcccccataacgtcaaggttgccgtgtgtgacatcccacccagaggc
ctcaaaatgtcctccacctttatcggcaacaacacagccattcaagagatattccgtcgt
gtgggcgagcagttcgccatgatgttcaggcggaaggctttcctccactggtatacaggg
gagggtatggatgaaatggagttcactgaggcagagagcaatctcaacgacctggtgtcc
gaataccagcagtaccaagacgccactgctcacgctgagtcggaaggggaagaagaagaa
gaggtggccgagaaggttcagtctcggatggaagttagactggaaacagtgactgaaaca
agtcaagagactatagatgagtag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (10)   

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