KEGG T07951: 117848817

Setaria viridis (green foxtail): 117848817

Entry

117848817         CDS       T07951

Name

(RefSeq) uncharacterized protein

K13100

pre-mRNA-splicing factor CWC22

Organism

svs Setaria viridis (green foxtail)

Brite

KEGG Orthology (KO) [BR:svs00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:svs03041]
    117848817
Spliceosome [BR:svs03041]
Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    117848817
Complex C
   U4/U6.U5 tri-SnRNP related factors
    117848817

SSDB

Motif

Pfam:

MA3 HEAT_5MP1_2

Other DBs

NCBI-GeneID:

117848817

NCBI-ProteinID:

XP_034586260

Position

3:complement(5602683..5608047)

AA seq 793 aa
MAASASPAASPPRRRHSHRDDESPRRRKRRASPSPPRSPSPGADADRRRRSRASPPDPDR
RRGDRDAKPSEEKENGHAKPGRDAEGDDRPPRRARVSDGEEDGDRRRRRARVSDDEKEDG
RRRRRARDSDEEREDRRGKRDRERDSRRHRRRSPSSESGSSPDDRRRRRHRRDEGSRRRD
DRRRRDDDRGERRRSPEKNEPTPPLPPPPPLLPEMIPGRTGGIYIPPFRMAQMMREVEDK
SSPEYQRLTWDALKKSINGLVNKVNATNIKNIVPELFAENLVRGRGLFCQSCIKSQMASP
GFTDVFAALVAVVNTKFPEIGRLLLVRVVLQLKRAYKRNDKPQLLAATKFIAHLVNQVVA
HELVALELLTVLLENPTDDSVEVAVGFVKECGAMLQDLSPQGLHAIFERFRGILHEGEID
KRVQFLIEGLFAIRKAKFQGFPAIRPELDLVEQEDQFTHEISLEDDLDPETNLNVFRANP
NFVEDEKAYENLKRSILGAESSEDEEGSDAASDDEEEEESDEEEDEEEMEIRDRTETNLV
NLRRTIYLTIMSSVDFEEAGHKLMKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQR
FCMINKVYQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTDALPWHVLAYIRLTEE
DTTSSSRIFIKILFQELSEHLGIRLLNERLNDPNMQGSFESIFPKDHPKNTRFSINFFTS
IGLGGITESLREYLKNMPRLIMQQQKPESSESESSGSESGSESSGSGSSSESESESSSDE
SERRRSKKRRKRT

NT seq 2382 nt +upstreamnt +downstreamnt
atggccgcctccgcctctcccgccgcctccccaccgcgtcgccgccacagccaccgcgac
gacgaatccccgcgccgccgcaagcgccgcgcgtccccgtccccaccccgctctccatcc
cccggcgccgacgcggaccgccgccgcagatctagggcttcaccgcccgaccccgaccgc
cgccgcggcgaccgcgacgccaagccctccgaggagaaggagaatggtcacgccaagccc
ggaagggacgcggagggcgacgaccgccctccccggcgcgctagggtttcggatggggag
gaggatggcgaccgccggagaaggcgggctagggtttccgacgacgagaaggaggatggc
cgccggcggaggcgggctagggattcggatgaggagagggaggaccgccgcggcaagcgc
gaccgggagagggacagccggcgccaccgccgccgcagccccagctcggagtcgggatcc
tcacccgatgaccgccgccggcgccgccaccgccgagatgagggctcgaggcggcgggat
gaccgaagacgcagggatgacgaccgtggggagcgtcggaggagccctgagaagaatgaa
ccgacgccaccccttcccccacctccgccgctgctgccggagatgatccctgggcgcacg
ggtgggatttacatcccgccattccgcatggcgcagatgatgcgggaggtggaggacaag
tcgagccctgagtaccagcggctcacctgggatgctctcaagaagagcatcaatgggctg
gtgaataaggtcaatgcgaccaatatcaagaatatagtgccggagctctttgcggagaac
cttgttcgtgggcgggggctcttctgccaatcgtgcatcaagtcacagatggcctcacct
gggttcaccgatgtttttgctgcacttgtcgcggttgtgaataccaagtttcctgagatt
gggcggttgcttcttgttcgtgttgtgctccagctcaagagggcatataagcgaaatgac
aagccccaattgcttgcagcaaccaagttcatagcacacttggtaaatcaggtggtggca
catgagcttgtagcgctggagcttcttacggtactccttgaaaatccaactgatgatagt
gttgaggtggctgttgggtttgtcaaagagtgtggggccatgctacaggacctatctcca
caaggtcttcatgctatttttgaaagatttcggggcatacttcatgaaggagaaatagac
aagagagtacaatttttgattgaaggcctttttgcaattagaaaggctaaatttcaggga
ttccctgccatccgaccagagttggatcttgtggagcaggaggaccagtttacacatgag
atatcccttgaagatgacctagaccctgagaccaacctaaatgttttcagggcaaatcca
aattttgttgaagatgagaaggcctatgagaacctaaagagaagcatcctgggagcagaa
tcttctgaagatgaagaaggatcagatgccgcttctgatgatgaggaagaggaagaatct
gatgaagaagaggacgaggaagagatggagataagggatagaacagagacaaatcttgtg
aatctaagaagaactatatatttgactattatgtccagtgttgattttgaagaagctggt
cacaagcttatgaaaattaaacttgagcctggtcaagagatggagctgtgtattatgctg
cttgagtgttgcagtcaagagaggacatatcttcggtattatgggctgctaggacagcgg
ttttgcatgatcaacaaagtgtaccaagagaactttgaaaaatgttttgtgcaacaatat
tcgatgattcatcgccttgaaacgaacaagttgaggaatgttgccaagttctttgcacat
ttgttggggactgatgcactcccttggcacgttttggcttacatccggctgacagaggaa
gacacaacatcctcttctcggattttcataaaaattctattccaggagttatcggagcac
ctgggcatacgcctactcaatgagagacttaatgatcctaacatgcaaggttccttcgag
tcaatcttccccaaggatcatccaaagaatacaaggttctccatcaatttcttcacctcc
attggtcttggtggtatcacggagagcctgagggagtacttgaagaacatgccgcgcctc
ataatgcagcagcagaagccggaatcatctgaatcagaatcaagcggatcagaatctggt
tcagaaagctccggctcagggtccagttctgagtccgagtcggaatcaagctctgatgag
agtgaaaggaggcgaagtaagaagagaaggaagaggacttga

All links

Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (6)   

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