KEGG   Shewanella xiamenensis: MKD32_17985
Entry
MKD32_17985       CDS       T08228                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
sxm  Shewanella xiamenensis
Pathway
sxm02024  Quorum sensing
sxm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sxm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MKD32_17985 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    MKD32_17985 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sxm03019]
    MKD32_17985 (hfq)
   03036 Chromosome and associated proteins [BR:sxm03036]
    MKD32_17985 (hfq)
Messenger RNA biogenesis [BR:sxm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     MKD32_17985 (hfq)
Chromosome and associated proteins [BR:sxm03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    MKD32_17985 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: UML93291
Position
complement(4099411..4099683)
AA seq 90 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQVESFDQFVILLKNTVSQMVYKHAIS
TVVPARPFNVAGHQNAQGGYGAQDDMPSGE
NT seq 273 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagacccatttttgaacgcactacgccgcgagcgcgtt
cctgtatctatttacttggtaaacggcattaaactccaaggacaggtagagtcgtttgat
cagtttgtcattctgttgaaaaacacagtgagccaaatggtttacaaacacgctatttct
actgtggttcctgctcgtccatttaacgttgctggccatcaaaatgcccagggcggttat
ggcgcgcaagacgatatgccaagtggcgaataa

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