KEGG   Tigriopus californicus (tidepool copepod): 131877930
Entry
131877930         CDS       T09700                                 
Name
(RefSeq) poly(A) polymerase beta-like isoform X1
  KO
K14376  poly(A) polymerase [EC:2.7.7.19]
Organism
tcf  Tigriopus californicus (tidepool copepod)
Pathway
tcf03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tcf00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    131877930
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tcf03019]
    131877930
Enzymes [BR:tcf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     131877930
Messenger RNA biogenesis [BR:tcf03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Poly(A) addition factors
     131877930
SSDB
Motif
Pfam: PAP_NTPase PAP_central PAP_RNA-bind MTPAP-like_central NTP_transf_2
Other DBs
NCBI-GeneID: 131877930
NCBI-ProteinID: XP_059079754
Position
3:complement(10030343..10042677)
AA seq 1141 aa
MMMAPMSSSSLNTPPPSPSVSGATPHKGINNYNVTTAGGGSKKSRQRIYNKNKSTPLIAD
LETGLEEALQTNGCYETTKALEERKQVIHRLNLLVRQWIQSVSLSRGMHWQDIEKIGGKV
VAYGSYMLGISHQGADIDALCIAPQHITRQEYFSSFFSLLYYQEEVTELRAIEECYVPVL
KMRYNNVEVDMTFARLSISEIPNDLDFLDKVDINTLDQKCLRSLNGYRSTQMILKLVPNV
EVFQRVLRAVKMWAKGEGVYGNTTGYLGGFAWAVMVAHVCINYPKSRAIDQVQQFFRTFG
EWQWPNAVSLVDYHIAPPGPHQTASWNPDKNVQERSHVMPVLTPVYPYANSTFNVSSKTL
QLINDRVSKAFDTTSRILKGSDEWASLFKLNHIFHEYDHFLLVIGSAIYHVQWFGLIESK
IRYFVSCVEKDSWETLESARIWPKPYLQRGSAGDQSRPASAPPSLVGDGHTRDSGVTSTD
SESGGGGTCDGTNGGGGSANGGVEIFRQLWFVGLQFQEGVKNIGDHSVEYKRATTWFRET
LYRHASSFHTDDMNIEAAYVHKTDLTGQLSKADVEEMLSYSSPKREPTPPPQPPPPSSTP
SYLPSMVASVAAVPLPPSLLGVGGGAPHSGSNGGTNGAGATDLETLLATATLANGGGGGG
RSSSGGGVVAAAALALANRLGQTPSASSTSVDVLSSPSYGVASPISSHMGPRPQTLTQPI
TTKPLMSSVAMDSNHGYLNPIYGVHNMHGPPTNIPPPSLGRNPMYNFGYHHQAVMAAHHG
HHYGPNHHHHHHVSNYDNRPYMERTFGGQGRSSTQSFHRNASSPMLTNNHVGGMSFYPSN
NRQSMLPSPQTSHAYGKSPTTHSRSPSMTPPPLFKNGPKGPGASGSHSDGSWSSGSSNPD
TEDAHPNLSHRQHQHHHHHVQYSGKSSKRRAGGGSKPVKLGNSTVGRSMNPTSSRHERPN
GTESNTDVSYNSSLDSENGRSISLSSDSFPPEIVTRAYRQHNQDRVPHNPMATPPKAFFG
PPPYHDISVPPPPTSPTHFSSRMSHNQRSRPYPEPTLLNSSAISKPVGFTRPSATELIDV
TTPRPVQRLPLNPVTFNLSQVNNNANPEDSSNIIIKTITSNTSSSTPVTTTSDNDPDSVF
Y
NT seq 3426 nt   +upstreamnt  +downstreamnt
atgatgatggctccgatgtcttcatcctcgctgaacacgcctccgccttcaccctcggtg
tctggtgccacgccccacaaaggcatcaataattacaatgtaacgacggctggaggagga
agtaaaaaatctaggcaacgcatttataacaaaaacaaatctactccattgattgccgac
ttggagactggcttggaagaggccttgcaaacaaacggatgttatgaaacgaccaaggcc
ctagaagagcggaaacaagtgatccaccgcctcaatcttttggttcgccaatggatccaa
agcgtgtcgttgtcccgtggtatgcattggcaagatatcgagaaaattgggggcaaagtc
gtggcctacggatcttatatgttgggcatttcccaccaaggcgccgacatcgatgcacta
tgtattgcgcctcaacatattactagacaagaatacttcagttcgtttttctcgctgtta
tattaccaagaagaggtcaccgaattgcgagccatagaagaatgctacgttcccgtgctg
aagatgcgctacaataatgtcgaggtcgacatgaccttcgcccgtctcagcatctcggag
atccccaacgacctcgactttcttgacaaggtggacattaacaccttggatcagaagtgt
cttcggagcctcaacggctatcgatccacgcagatgatcctcaaactcgtgcccaatgtg
gaggtcttccaaagagtgcttcgagccgttaaaatgtgggctaaaggcgagggtgtctac
ggcaacacaacaggctatttgggagggtttgcttgggccgtgatggtggctcacgtttgt
atcaactatccaaagagccgtgctatcgaccaggttcagcaattcttcaggaccttcggc
gaatggcaatggcccaatgccgtgtctttggtagattaccacatcgccccaccaggacca
catcaaactgccagctggaacccggacaaaaacgtccaagagaggtcccacgtaatgcct
gtgctgacgccagtatatccttacgccaactccactttcaatgtgagctccaaaaccctc
cagctgataaacgacagagtgagcaaagccttcgataccacatccaggattttgaaaggc
tcggatgaatgggcgtctttgttcaagctgaatcatatattccatgaatatgaccacttc
ctcctggtgataggaagtgccatttatcacgtgcagtggttcggtctgatcgaaagcaag
atccgttacttcgtcagctgtgtcgagaaggactcttgggagactttggagagtgccagg
atctggcccaagccttaccttcaacgggggtccgctggagaccaatctcgtcccgcatca
gccccgccctctttggtcggggatggacacacccgagattctggagtaacttccactgac
tccgagagtggaggtggtggtacgtgtgatgggaccaatggtggtggtgggtccgctaat
ggaggtgtggagatcttcagacaactctggtttgtgggtttgcaattccaggagggcgtc
aagaacattggtgatcactcggtggagtacaaaagggccacaacttggttccgtgagacg
ctctataggcacgccagcagcttccacaccgatgatatgaacatagaagccgcctacgtt
cataagacggatttgacaggacaactctccaaggccgacgtcgaggaaatgctatcgtac
tcttctcccaagagagagcccacgcccccgccacaaccccctcctcctagcagcactcca
agctacttaccctccatggtggcctctgtggcggctgtcccgctcccgccctcgctctta
ggggtgggaggaggcgctccacactccggttccaatggaggaaccaatggggcgggagcg
actgacctcgagacacttctcgccacagccacactcgccaacgggggaggcggaggaggg
aggagcagcagcggtgggggcgtggtagcagctgcagccttggccctagccaatagactt
gggcaaacgccatcagcctcgtcgacttcggtggatgtcctctcatcgccctcttacggc
gtagcctcgcccatatccagtcacatgggcccacgccctcaaacccttacacaacctatt
acaaccaagcctttgatgtcgtctgtggcgatggactcgaaccatggctacctgaatccg
atttatggtgtgcacaacatgcatggtccacccaccaacatcccgcctccatctctggga
agaaatccgatgtacaattttggctaccatcatcaagccgtcatggcggctcatcacggc
catcattatggccccaaccaccaccaccaccaccatgtctccaattacgacaaccgtcct
tacatggagcggacatttggaggccaaggaaggtcctcaacccagagcttccataggaac
gcaagttctcccatgctaacgaacaaccacgtgggagggatgagcttctatccgtccaat
aatcgccaatcaatgctcccctctccgcaaacgagccacgcctacggaaaatcccccacg
acacactcccgatcgccctctatgaccccgccgcccctcttcaaaaacgggcccaagggt
ccgggtgcatctggatctcactcggatgggagttggtcctcgggctcctccaatcctgat
acggaggatgctcatcctaacttgtcacatcgtcaacatcaacatcatcaccatcatgtc
caatactcgggtaaatcgagcaagaggcgagccggaggtggcagcaagccagtcaaattg
ggcaacagcacagttggcagatctatgaatcccacgagttcccgacatgaaagacccaat
gggactgagtccaacacggatgtcagttacaacagctcgttggactctgaaaatggaaga
tcgatctcgctatcatccgatagtttcccacccgagattgtgacccgggcctaccgtcag
cacaatcaggaccgcgtccctcacaatcccatggccaccccacccaaggcattctttgga
cccccgccgtaccacgacatcagtgtaccacccccgcccacttcgccaacccacttctca
tcgaggatgagccacaaccagagatcaagaccctatcctgagccgacactcctcaactcc
tcagctatttccaagccagtgggcttcacgagaccgtctgccaccgagctaatcgatgtg
accacgccccgaccagttcaaagattacccttgaacccggttacgttcaatttgtctcag
gtcaacaataatgccaatcccgaagactcctctaatatcatcattaaaaccattacctcc
aatacttcctcctccactccagtcaccacgactagcgacaacgacccggattcggtcttc
tattga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (11)   

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