KEGG T09700: 131892358

Tigriopus californicus (tidepool copepod): 131892358

Entry

131892358         CDS       T09700

Name

(RefSeq) pre-mRNA-splicing factor CWC22 homolog

K13100

pre-mRNA-splicing factor CWC22

Organism

tcf Tigriopus californicus (tidepool copepod)

Brite

KEGG Orthology (KO) [BR:tcf00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tcf03041]
    131892358
Spliceosome [BR:tcf03041]
Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    131892358
Complex C
   U4/U6.U5 tri-SnRNP related factors
    131892358

SSDB

Motif

Pfam:

MA3 MIF4G SR-25

Other DBs

NCBI-GeneID:

131892358

NCBI-ProteinID:

XP_059098173

Position

12:complement(1725493..1733551)

AA seq 924 aa
MDQDSESQAPNPAPRPPRESTGRRSSSSSSSSSSDSDSDSAPSRRDKAKRRLARRETKRA
RRSSSSSSAASEASVERSRRRKKAAPAPASSYAPMARAKDIPAVKDVAKDPKASLLTSRT
GGAYIPPAKLRLLQQQITDKSSIEFQRLSWEALKKSINGLINKVNTPNIGVIVRELFGEN
VIRGRGLLCQAIMTAQTASPTFTHVYAALGAIVNSKFPNVGELLLKRLILNFKRGFKRSD
KTRCMASTRFIAHMVNQQVAHEVLALEILTLLLESPTDDSVEVAITFLKECGQKLSEVSP
RGIHAIFERLRHVLHESLLDKRTQYMIEVMFQVRKDGFKDNPSVMDDLDLVEEDDQFTHM
ITLDDATQGDEILNVFKNDPSFLENEEKYKAIKNELLGEESGSGSEDANSNSSGSSESES
EDEEKELAAPIIDQTETNMIALRRTIYLTLQSSLDFEEAAHKLLKMNLKPGHEKELCHMI
LDCCAQQRTYEKYYGLLAQRFCQLNRVYVDPFQSIFESTYSTVHRLEIGKLRNVARLFAH
LLFTDAINWEVLSMIHLNEHETTSSSRIFIKILFQELAEYMGAKKLVERILDPTLQSAFE
GLFPRDDPANTRFSINFFTSIGLGNLTEDLRAFLKANPRKKVEVSSSSSSSSSSSSSSSS
DSSSSSSSEEERAKKKKRTKKGSKKRVKHDDKENKNKRLKNASEENMEKDDRSRRKKERK
RSLSGEKRERKPSPERRARDQSNDRKERNRQRGRKKRDRSGERKERDRSGERKERDRSGE
RKERDRSGERKERDRSGERKERDRSGERKERDRSGERKERDRSRERKERNSSRDKKETNT
SRDRKEERNHSGDRKERRRRYDSSDRKEERTGSDRLTRDDSNDEERTKRRRRDNRKVRDN
SDDEDRRQQRRREEKVSSRSRDRR

NT seq 2775 nt +upstreamnt +downstreamnt
atggaccaggattctgaatcccaggccccgaatccggcgccacgcccacctcgagaatcg
acaggccggcgctcctcctcctcctcttcgtcctcgtcctctgattcagattcagattcg
gcgccgtccagacgggacaaagctaagcgtaggcttgcccgacgtgaaaccaagcgcgcc
cgacgctcctcttcttccagctcagctgcttcagaagctagtgttgagcggtcaagacgc
cgaaagaaggctgcccctgcgccagcttccagttatgcgccaatggcacgggctaaggat
attccagcggtcaaagatgttgccaaggatcccaaagctagcctattgaccagtcgcact
ggaggcgcttatattccgccggccaagctgcgtctgttgcaacaacagatcacggataaa
agctcaattgagttccagcgtttgtcatgggaggccttgaaaaagtccattaacggattg
atcaacaaagtgaacacgcccaatattggcgtgatcgtgcgtgagctcttcggcgagaac
gtcatccgaggccggggtttgctctgtcaggccatcatgacggctcagactgcctctccc
acattcacccatgtctatgcagccttgggggctattgtgaactccaagttccccaatgtg
ggcgaactcttgctgaagaggctcattctcaactttaagcgcggcttcaagcgaagtgac
aagacccgttgcatggcctccaccagatttattgcacacatggtcaatcaacaggttgcc
catgaggttctggctctggagattttgacgctgttgttggaatctccaacggacgactcc
gttgaggtggccatcacgtttttgaaggaatgcggtcagaagttgagtgaggtgtctccc
cgtgggattcatgccatctttgaacgactcagacacgttctacacgaatcccttttggat
aaaagaacgcagtatatgatcgaagtcatgtttcaagtgcggaaagatggattcaaggat
aatccttcggtcatggacgatttagatttggtggaagaggacgatcagttcacgcacatg
atcaccttggacgatgccacccaaggcgacgagattttgaacgtcttcaagaacgatcct
tcattcttggagaacgaggaaaagtacaaggccattaagaatgaacttcttggcgaggaa
tcggggagtggctctgaggatgccaattcaaactcttctggatcatcagagagtgaatcc
gaagatgaggagaaagaactggctgcacccatcattgatcagacagagaccaatatgatt
gcactccgacgaaccatctacctgactctgcaatcgtcactggatttcgaagaagccgcc
cacaagttgttgaagatgaaccttaagcctggtcatgagaaggaactttgccacatgata
ctagattgctgtgcacaacaacgtacttacgagaagtattatggactcttggcccagcgt
ttctgccaattgaatcgcgtttacgtggacccgttccaatcgatctttgagtccacctac
agtacagtccatcgtttggagattggaaagctccgcaacgtggctagactgtttgctcat
ctcctcttcacggatgccatcaactgggaggtgctcagtatgattcatctcaatgagcat
gagaccacgagctcatccaggatcttcatcaagatactcttccaggaattggctgaatac
atgggtgccaagaaactggttgaacgcatcctggatccgactctccaaagcgcttttgaa
ggcctatttccgcgagacgatcccgccaatacacgtttctcgatcaatttttttacttcc
atcggattaggcaacttgacggaggacttgcgagccttcttgaaggccaatcccaggaag
aaggtcgaagtttctagctcgtcctcctcttcgtcatcgtcctcttcttcctcatcatct
gacagctcttcaagttcttcaagtgaagaggagagggccaaaaagaagaagagaaccaaa
aagggatcgaagaagagggtaaaacacgatgacaaggaaaacaagaataaaagactcaaa
aatgcttcagaagaaaatatggaaaaagacgacaggagcagacgaaagaaagaaaggaaa
aggagtctctcgggcgaaaagcgtgagcgcaaaccctccccagaaagaagggcacgagat
caatcaaatgatagaaaggaacgcaatcgccaaagaggaaggaagaaacgcgatcgctcg
ggagagaggaaggaacgcgatcgctcgggagagaggaaggaacgcgatcgctcgggagag
aggaaggaacgcgatcgctcgggagagaggaaggaacgcgatcgctcgggagagaggaag
gaacgcgatcgctcgggagagaggaaggaacgcgatcgctcgggggagaggaaggaacgc
gatcgctcaagagaaaggaaagaacggaactcctcaagagacaagaaggaaacgaatact
tcaagagataggaaggaagaacgtaaccactcaggagataggaaggaacgtaggaggagg
tacgatagctcagacaggaaagaggaacgaactggatctgacaggttaacccgcgacgat
tcaaatgatgaagaacgaaccaagagacggcgtcgagataacaggaaagttagggataat
tcagatgatgaagatagaaggcaacaacgtcgaagagaggagaaagtgtcctcaagatct
cgagaccggaggtga

All links

Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (9)   

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