KEGG   Trifolium pratense (red clover): 123893664
Entry
123893664         CDS       T08949                                 
Name
(RefSeq) nuclear poly(A) polymerase 4 isoform X1
  KO
K14376  poly(A) polymerase [EC:2.7.7.19]
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    123893664
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpra03019]
    123893664
Enzymes [BR:tpra01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     123893664
Messenger RNA biogenesis [BR:tpra03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Poly(A) addition factors
     123893664
SSDB
Motif
Pfam: PAP_NTPase PAP_central PAP_RNA-bind NTP_transf_2 MTPAP-like_central Nrap_D2
Other DBs
NCBI-GeneID: 123893664
NCBI-ProteinID: XP_045799389
Position
LG7:3158129..3164942
AA seq 733 aa
MVVSVSPNGGSTPPPPPQQEQANKDRFTKPISLAGPTDSDRHRNTELEKFLVDSGLYESN
EEAASRQEVLCRLDQIVKSWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADID
TLCIGPSYVNREQDFFIILHNILAEMEEVTELHPVPDAHVPVMKFKFQGISIDLLYASIS
ILVVPEDLDISDGSILYDVDEQTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRR
GVYSNVTGFLGGVNWAILVARICQLYPNAIPSMLVSRFFRVYSQWRWPNPVMLCPIEENE
LQLPIWDPRRNHRDRYHIMPIITPAYPCMNSSYNVSTSTLRVMMEQFCCGNKICDEIELN
KSQWSALFQPYVFFEAYKNYLQVDIVALDADDLLLWRGWVESRLRQLTLKIERDTHGMLQ
CHPYPHEYADTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRETVDEFRQEIISYGYWKPG
MEIYVSHVRRKQLPAFVFPDGYKRTRMPRHINHATEKMGDDTRKCYSGSSSSERCVKRKN
NSEMVDVKPDKPEKRTSVSPQRLECVSPESCTSKSGGTPQMSIECIEGVRQDGSTTEDVD
SNCKIKSSDGLLGSGAITEVGDMQINGTSFVGSTHDKLKSKALEVLNENGVNGDKARDLA
FVCLERAETTSTKSLANWEEGAVGMDQQLDKACNFTRAECSDYAPSASTQNLNCEMSDSG
VYKLKMGLGQNFL
NT seq 2202 nt   +upstreamnt  +downstreamnt
atggtggtttccgtaagtcctaacggtggttctacaccgccaccgccgccgcaacaagaa
caagctaacaaggatagatttacaaaacctatctcccttgctggtcctaccgactctgat
cgccatcgtaacaccgaattagagaagtttttggttgattccgggctttatgagagcaac
gaagaagctgcaagtagacaagaggttctttgccgcctcgatcagatcgtgaaaagctgg
gtgaagcagttgacacgccaacgaggctacacagatcagatggttgaggatgcaaatgct
gtcattttcacttttggctcttaccgactaggggttcacggacctggagcggacatagac
actttgtgcattggtccttcctatgtaaatcgagagcaagacttcttcatcattttgcat
aacatcctggctgaaatggaagaagttaccgaacttcacccagttcctgatgcacatgtc
ccagtaatgaaattcaagttccagggaatatctatagatttgctgtatgcaagtatatct
attttggttgtgccagaagatcttgatatctcagatggttccattctgtatgatgttgat
gagcaaactgttcgaagtctaaatggctgccgagtggcagatcagattcttaaactggtt
ccaaatgttgagcacttccgaactacgctgagatgtttgaagttttgggccaaaagacgc
ggtgtttattcaaatgttacgggattccttggaggtgtaaactgggctattttagttgct
cgaatttgccagctttaccctaatgcaatccccagtatgttggtttctagattcttcagg
gtctattcacaatggcggtggccaaaccctgtaatgctatgccctatagaagagaatgaa
ctgcaattacctatatgggatcctcgcagaaaccatagggacaggtatcatattatgcca
ataattactccggcatacccttgcatgaattccagctacaatgtctcaacaagcactctt
cgtgttatgatggaacagttctgctgtggcaacaagatttgtgacgaaattgagcttaac
aaatcacagtggagtgcactttttcagccttatgtcttttttgaggcatataaaaactat
ttgcaagttgacatagttgcattagatgctgatgatttacttttgtggagaggttgggta
gaatcccgtctgagacagctaaccttgaagatagagcgagatacccatgggatgctgcag
tgtcatccttatccacatgagtatgcagacacgtccaagccctgtgcacattctgcattt
ttcatgggcttgcaaagaaaagagggagtaagaggtcaagaaggacagcaatttgatata
cgtgaaacggttgatgagttcagacaagaaattatttcgtatggttattggaagccgggg
atggaaatttatgtttctcatgttcgtcgaaagcagctccctgcatttgtttttccagat
ggttacaaacgcactcgaatgccgaggcatataaaccatgcaactgagaaaatgggtgat
gataccagaaagtgctactctggatctagctcttctgaaaggtgcgtcaagaggaagaat
aactctgaaatggtggatgtgaagccagataaaccagagaagcggacatctgttagccca
cagagactagagtgtgtttcacctgaaagttgtactagtaaatcgggtggtacacctcaa
atgagtattgagtgtattgaaggggttaggcaagatggatcaacaacggaagatgtcgat
agcaattgtaaaatcaagtcatccgatggactcttaggaagtggtgcaattactgaagta
ggtgacatgcagataaatggaacaagttttgttggctccacacatgataagctcaaatca
aaggctttagaagttctgaatgagaatggagtcaatggggataaagctcgggacctggct
tttgtttgcttggaaagggcagaaactacatctacaaaaagcttggcaaattgggaagag
ggtgctgttggaatggatcaacaactggacaaagcttgtaatttcaccagggctgaatgt
tcggattatgcaccaagtgccagcacccagaacctcaattgtgagatgtcagactcagga
gtgtataaattgaagatgggactaggtcagaattttttgtag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (10)   
   RefSeq(nuc) (8)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (22)   

Download RDF
DBGET integrated database retrieval system