KEGG T01078: THAPSDRAFT

Thalassiosira pseudonana: THAPSDRAFT_13920

Entry

THAPSDRAFT_13920  CDS       T01078

Name

(RefSeq) predicted protein

K14376

poly(A) polymerase [EC:2.7.7.19]

Organism

tps Thalassiosira pseudonana

Pathway

tps03015

mRNA surveillance pathway

Brite

KEGG Orthology (KO) [BR:tps00001]
09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    THAPSDRAFT_13920
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tps03019]
    THAPSDRAFT_13920
Enzymes [BR:tps01000]
2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     THAPSDRAFT_13920
Messenger RNA biogenesis [BR:tps03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Poly(A) addition factors
     THAPSDRAFT_13920

SSDB

Motif

Pfam:

PAP_NTPase PAP_central PAP_RNA-bind NTP_transf_2 MTPAP-like_central Nrap_D2

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

JGI:

UniProt:

Position

5:complement(<272504..>273751)

AA seq 367 aa
LESTEGIQRRERVLVKMGNLMREWVKGVAVKKGLNRDAVEGAGGELFTSGSYRLGVHEPG
ADIDTIAVAPNICTREDFFDSLAERIRRHPDVTNFVPVENAAVPILTFDWEGINIDLLFA
RLNASSVPRDFDIDNDLVLSGVDSATEKSLNGPRVTNLIAALVSGTDERYQTFLTVVRLV
RKWAKARGLYSNKMGYWGGVNINIAVALVLQLYPNACPASLLRKFFLVFKSWRWPNPVML
TKPHDAELGLPVWNSFQAANMRQVAPMVTPAYPAMNSTLSVSRQTLQILHEEFCRGHNVV
DKLYKDFQKGALDKDKIESGDIWKELFEPSDFFIGYPYYLSLCIVGPSQADAQAWAGFVE
SRLRKLV

NT seq 1101 nt +upstreamnt +downstreamnt
ctcgaatcgaccgagggcatacaacgtcgcgaacgcgtgctggtgaagatgggcaatttg
atgagggagtgggtgaagggtgtggcggtgaagaagggattgaatcgggatgcggtggag
ggtgcggggggagagttgtttactagtgggagttatcggttgggtgttcatgagcctggg
gcggatattgacaccatcgccgtagcacccaacatatgcacccgcgaagacttcttcgac
agtctagccgaacgaatccgtcgtcatcccgatgttaccaactttgtacccgtggagaat
gcagcagttcccattttaacgtttgactgggaggggattaatattgatttactctttgct
agattgaatgcctcgagtgtaccgagagatttcgatattgataatgatttggtattgagc
ggagtggattcggctacggagaagtcattgaatggaccacgtgtcactaacttgattgcg
gcgttggtcagtggaacggatgaacggtatcagacgttcttgacggtggttcgcttggtg
agaaagtgggctaaggcgaggggattgtactccaacaaaatgggctattggggcggcgtg
aacatcaatattgcagttgcattagtgctccaactctacccaaacgcatgtccggcaagt
ctcctacgaaagttcttcctcgtcttcaaatcatggcgatggcctaatccggtcatgctg
acgaagcctcatgatgccgagttgggactgcccgtttggaattcattccaggcggcgaac
atgaggcaggtggcaccgatggtaactccggcgtatccggcgatgaactctacgttgagt
gtgagtcgtcagacgcttcagattttgcatgaggagttttgtcgggggcacaatgttgtg
gataaattgtacaaggactttcagaagggagcgttggataaggacaagattgagagtggt
gacatttggaaagagcttttcgagccatcggatttcttcattgggtatccatattacttg
agtctttgtattgtcggtccatcacaggcagatgctcaagcatgggctggatttgtggag
tcgaggctgagaaagctcgtg

All links

Gene (43)   
   RefGene (39)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (52)   

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