KEGG   Thalassiosira pseudonana: THAPSDRAFT_32217
Entry
THAPSDRAFT_32217  CDS       T01078                                 
Name
(RefSeq) predicted protein
  KO
K13100  pre-mRNA-splicing factor CWC22
Organism
tps  Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:tps00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tps03041]
    THAPSDRAFT_32217
Spliceosome [BR:tps03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    THAPSDRAFT_32217
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    THAPSDRAFT_32217
SSDB
Motif
Pfam: MA3 MIF4G SBE2_C
Other DBs
NCBI-GeneID: 7450443
NCBI-ProteinID: XP_002287540
JGI: 32217
UniProt: B8BVR7
Position
2:<2253009..>2254613
AA seq 506 aa
QRQSWENLKRSINGTINRLSPSTIKPLIHTLFTTANLLRGRGILARSLLRASQASPQYAP
SYAALMAVINTKLPECGELLLTRAILAFRRGYKTRDRNVVSSTLSLLGHLFNQGMAHELL
SLQILTVLLDGDPTEDSVDVAVGYMCVVGRQLSEVSPAGVHAVMERFRGLLHEGSIGRRA
QYRIESLLKIKKGGFRDYPTIPDEENLDLVEREDQITFELGLDDEGLKKEEGLDVFHYDE
EYDENEAEWAKIRAEILGDEDDSSDESGSDSDESEDEKEIADQEFDTGGGQEAKKTVVIQ
DLTETDLVHLRRTIYLTIMSSATFEECTHKLAKMDIPEGKESELINMIIECCSQERTFLR
YYGLVSGRFCLLHERWQDAFEEAFATQYNTIHRLETNKLRNVAKLFGHLLHTDSISWSVL
SCIHLNEDETTSSSRIFIKILVQEMAEAMGMVALKQQPATSTREWFKGMFPKDNARNTRY
AINFFTSIGLGPLTDGMREFLKNAPK
NT seq 1518 nt   +upstreamnt  +downstreamnt
cagcgtcaatcctgggaaaacctcaaacgatccataaacgggacaatcaatcgtctctcc
ccctccacaatcaaaccactcattcataccctcttcaccactgccaatttactccgtgga
agggggatattggctcgttcgttattacgagcctcgcaggccagtccgcagtatgcacct
agctatgcggctctcatggcggtgatcaataccaagttgccagagtgtggggaattattg
ttaacgagggctattctagcctttcgacgtgggtacaaaactcgtgatcggaatgtagtc
tcgagtacactgtcgttgttgggacatttattcaaccagggaatggcccatgaattgctc
tccctccagatattgaccgtgttgttggacggagatccgacggaggatagcgtcgatgtg
gcagtgggatatatgtgcgttgttggacggcagttgagcgaagttagtccagcgggagtt
catgccgttatggaacgatttcggggattgttgcacgagggatctattggacgaagggct
cagtatcgtattgaatcattgttgaagattaagaagggagggttcagggactatcctacc
attccggatgaggagaatttggatttagtggaacgggaggatcagattacgtttgagttg
gggttagatgatgaggggttgaaaaaggaggaggggctggatgtgtttcattatgatgag
gagtatgacgagaatgaagctgagtgggcgaagattagggcggagattttgggggatgaa
gacgatagtagtgatgagagtgggagtgattcggatgagtctgaggatgaaaaggagatt
gccgatcaggagttcgacactggaggagggcaggaagccaaaaagacggtggtcattcag
gacttgactgaaacggacttggttcacctccgtcgtacgatctatttgaccatcatgtcc
agtgccacatttgaggagtgcactcacaagcttgccaagatggacattcccgaggggaaa
gaatcggagctcatcaacatgattattgagtgttgctcccaggaacgcacatttctccgt
tactacggcctagtctcgggtcggttttgtcttctccatgaacgttggcaggatgccttt
gaggaagcgtttgcgacacagtacaacacgattcacagactggagacgaacaaactccgt
aatgttgccaagttgttcgggcatcttcttcacaccgattccatttcttggtcggtgcta
tcgtgtattcacttgaacgaggacgagacaacttcttcgtcgcgtatcttcatcaagatt
cttgttcaggagatggcagaggcaatgggaatggttgcattgaaacagcagcctgcgacg
tccacaagggaatggttcaagggaatgtttcccaaagataatgctcgcaatactcggtat
gcgatcaacttcttcactagtatcggtcttggtcctctcacggatggcatgcgagagttc
ctgaagaatgctccgaaa

  All links  
Gene (84)   
   RefGene (80)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (90)   

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