KEGG   Trachemys scripta elegans (red-eared slider): 117886196
Entry
117886196         CDS       T07347                                 
Symbol
TUBB1
Name
(RefSeq) tubulin beta-1 chain
  KO
K07375  tubulin beta
Organism
tst  Trachemys scripta elegans (red-eared slider)
Pathway
tst04145  Phagocytosis
tst04517  IgSF CAM signaling
tst04540  Gap junction
tst04814  Motor proteins
tst05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:tst00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04517 IgSF CAM signaling
    117886196 (TUBB1)
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagocytosis
    117886196 (TUBB1)
  09144 Cellular community - eukaryotes
   04540 Gap junction
    117886196 (TUBB1)
  09142 Cell motility
   04814 Motor proteins
    117886196 (TUBB1)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    117886196 (TUBB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tst03036]
    117886196 (TUBB1)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:tst04812]
    117886196 (TUBB1)
   04147 Exosome [BR:tst04147]
    117886196 (TUBB1)
Chromosome and associated proteins [BR:tst03036]
 Eukaryotic type
  Centrosome formation proteins
   Microtubules and associated factors
    Other tubulins
     117886196 (TUBB1)
Cytoskeleton proteins [BR:tst04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulins
    117886196 (TUBB1)
Exosome [BR:tst04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   117886196 (TUBB1)
  Exosomal proteins of colorectal cancer cells
   117886196 (TUBB1)
  Exosomal proteins of bladder cancer cells
   117886196 (TUBB1)
SSDB
Motif
Pfam: Tubulin Tubulin_C Misat_Tub_SegII Tubulin_3 Tubulin_2
Other DBs
NCBI-GeneID: 117886196
NCBI-ProteinID: XP_034643746
Position
12:complement(10489901..10496273)
AA seq 453 aa
MREIVHLQIGQCGNQIGAKFWEVISDEHGIDVTGNYHGDSPLQLERINVYFNEAHSKKFV
PRSILVDLEPGTMDSVRSSKIGPLFRPDNFIHGNSGAGNNWAKGHYTEGAELIDSVMDVV
RNECESCDCLQGFQLIHSLGGGTGSGMGTLLINKIREEYPDRIMNTFSVVPSPKVSDTVV
EPYNAILSIHQLIENTDETFCIDNEALYDICFRTLKLPSPTYGDLNHLVSLTMSGVTTSF
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALSVPELTQQMFDARNMM
AACDPRHGRYLTVACIFRGQMSTREVDEQLLAIQTKNSAYFVEWIPNNVKVAVCDIPPRG
LKMAATFIGNNTAIQELFIRVSEQFSAMFRRKAFLHWYTGEGMDEMEFSEAESNTNDLVS
EYQQYQDATVEVDEYKEVEVEVSQEQETDEKDF
NT seq 1362 nt   +upstreamnt  +downstreamnt
atgcgtgaaattgtgcatcttcagattggccaatgtggaaaccaaattggagctaagttc
tgggaagtgataagtgatgaacatggaattgatgtcactgggaactaccacggtgattca
ccactgcagcttgagagaattaatgtgtacttcaacgaagctcattccaagaagtttgtg
ccccgttctatcttggtggacctggaacccggaaccatggacagtgtacggtccagcaaa
ataggcccactctttcgacctgacaattttattcatggtaattcaggtgctggcaacaac
tgggctaaaggccattacacagaaggcgctgagctgattgacagtgtaatggatgtggtc
aggaatgagtgtgagagctgtgattgtctgcaggggtttcagctcatccactcacttgga
ggaggcacaggatctggtatgggcacactccttatcaacaaaatcagagaagaataccct
gataggattatgaatactttcagcgtagtgccttcacccaaagtatcagacacagtggta
gagccatataatgcaatactgtccatccaccagctgatagagaacacagatgaaaccttt
tgtattgacaatgaagctctgtacgacatatgctttagaaccctaaaactccccagcccc
acctatggtgacctcaaccatctggtgtccctgaccatgagtggtgtcaccacctcattc
cgttttcctggtcaactcaatgcagatctgaggaagctggctgtgaacatggtgcctttc
cctcgcttgcacttctttatgcctggctttgctccactgacagctcgaggcagtcagcaa
tacagagccctctcagtcccagagcttacccaacaaatgtttgatgcacggaacatgatg
gcagcttgtgaccctcgtcatggacgctatttgactgtggcatgcatcttcagaggccag
atgtctaccagagaagtggatgaacagttgctggctatccagaccaaaaatagtgcctac
tttgtggagtggatccctaacaatgtgaaagtggcagtgtgtgacataccaccacgaggg
ctgaagatggcagccacctttataggcaacaacacagccatccaagagctcttcattaga
gtttctgaacagttctcagctatgttcagacggaaagcatttctccactggtatactgga
gaaggtatggatgagatggagttttctgaagcagaaagcaacaccaatgacttggtgtct
gagtatcaacagtatcaggatgccacagtagaggtagatgaatataaagaggtagaagtg
gaagttagccaagaacaagaaacagatgaaaaagatttttaa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (11)   

Download RDF
DBGET integrated database retrieval system