KEGG   Thermostichus vulcanus: NIES2134_101100
Entry
NIES2134_101100   CDS       T05980                                 
Symbol
sigD
Name
(GenBank) group2 RNA polymerase sigma factor
  KO
K03087  RNA polymerase nonessential primary-like sigma factor
Organism
tvn  Thermostichus vulcanus
Brite
KEGG Orthology (KO) [BR:tvn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tvn03021]
    NIES2134_101100 (sigD)
Transcription machinery [BR:tvn03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     NIES2134_101100 (sigD)
SSDB
Motif
Pfam: Sigma70_r3 Sigma70_r2 Sigma70_r4 Sigma70_r1_2 Sigma70_r4_2 HTH_10 HTH_24 HTH_25 DUF1525 HTH_53 MerR_1
Other DBs
NCBI-ProteinID: BAY52285
Position
complement(114584..115531)
AA seq 315 aa
MDTSKDLVRTYLREIGRVPLLTHEQEVIYGKQVQQLAAMNEIREKLAAELNREPTRAEWA
AAANISEGELETIIENGERAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRG
VEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLG
RAATINELAAELELTPAQVREYLERARQPLSLDVRVGDNQDTELGELLEDSSISPEEFAT
QSLLRSDLERLMAELTPQQRHVLSLRFGLENGQPLTLAKVGELLNISRERVRQIEREALS
KLRKRRGDIHEYLAS
NT seq 948 nt   +upstreamnt  +downstreamnt
atggacacctcaaaagatttagtgcgcacttacctacgggagattggccgtgtgccattg
ctcacccacgaacaggaagtgatctacggaaaacaggtgcagcaacttgccgccatgaac
gagattcgcgaaaagctggcggcagaactcaaccgtgaacccacccgtgctgaatgggct
gccgccgccaacatcagtgaaggggagttggagaccattatcgagaatggcgagcgcgcc
aaacggaaaatggtggaagccaacctacggctggtggtttcagtggccaaaaagtacatt
aagcgcaatgtggatctgctcgatctcatccaagagggaaccatcgggatgcagcgggga
gtagaaaaatttgaccccactaaggggtatcgcttctcgacctatgcctactggtggatt
cgccaagccatcacacgggcgatcgctgaaaaggggcggacgattcgcctccctatccac
atcaccgaaaagctgaacaagattaaaaaagcccagcgacaactgtcccaacgcctgggt
cgcgccgccacgattaacgaactggccgcagagctggagttaacccctgcccaagtgcgg
gaatacctcgaacgggcgcggcagcccctctcccttgatgtccgtgtcggcgataatcag
gacacggagttgggggaattgctggaggattcctccatttcacccgaggagtttgcaact
caatccctgttgcgcagtgacctcgaacggctaatggcggagctgacgccacagcaacgc
cacgtcctctccctacgctttggtctagagaatggtcaacccctcacccttgccaaagtg
ggcgaactgctcaacattagtcgtgagcgggtgcggcaaattgagcgggaggccctcagc
aaactccgcaaacgccggggcgatattcacgagtaccttgctagctag

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein domain (11)   
   Pfam (11)   
All databases (12)   

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